uid=AND,o=lter,dc=ecoinformatics,dc=org all public read MV008 Sarah J. K. Frey

Forest Ecosystems and Society;Oregon State University Corvallis OR 97331

sjkfrey@gmail.com Julia A. Jones

Oregon State University;Department of Geosciences; Wilkinson Hall 104 Corvallis OR 97331-5506 USA

(541) 737-1224 Julia.Jones@oregonstate.edu geojulia@comcast.net http://ceoas.oregonstate.edu/profile/jones/ http://orcid.org/0000-0001-9429-8925 Mark D Schulze

H.J. Andrews Experimental Forest; PO Box 300 Blue River OR 97413

541-822-6336 mark.schulze@oregonstate.edu Other Researcher Adam Scott Hadley

Forest Ecosystems and Society;Oregon State University Corvallis OR 97331 USA

hadley.adam@gmail.com Other Researcher Matthew J. Gregory Tool Contact Julia A. Jones

Oregon State University;Department of Geosciences; Wilkinson Hall 104 Corvallis OR 97331-5506 USA

(541) 737-1224 Julia.Jones@oregonstate.edu geojulia@comcast.net http://ceoas.oregonstate.edu/profile/jones/ http://orcid.org/0000-0001-9429-8925 Principal Investigator Matthew G Betts

Department of Forest Ecosystems and Society; 201E Richardson Hall; College of Forestry; Oregon State University Corvallis OR 97331

(541) 737-3841 matt.betts@oregonstate.edu http://www.fsl.orst.edu/flel/index.htm Other Researcher Sarah J. K. Frey

Forest Ecosystems and Society;Oregon State University Corvallis OR 97331

sjkfrey@gmail.com Creator Julia A. Jones

Oregon State University;Department of Geosciences; Wilkinson Hall 104 Corvallis OR 97331-5506 USA

(541) 737-1224 Julia.Jones@oregonstate.edu geojulia@comcast.net http://ceoas.oregonstate.edu/profile/jones/ http://orcid.org/0000-0001-9429-8925 Creator 2020-02-18 Vertical air temperature from 11 trees in the Andrews Forest has been collecting beginning in 2011. The trees are at a variety of elevations and are of various species and ages. The 11 trees were selected form the H.J Andrews phenology study air temperature network (MS045). This study examines air temperatures at multiple heights in each tree. The first sensor is at 1.5 m and subsequent sensors measure every 5 m up the tree. Each sensor includes a light (illumination) sensor, which can be used to assess the value of the data. This is not a measurement of the actual light conditions. air temperature forests LTER controlled vocabulary See related files. Related FilesTitle: HOBO workflowDescription: Includes PDF files that describe the steps from field deployment through the production of raw data, which is input into the Python code, instructions to offload data from the shuttle, and download data from the logger with the shuttle.URL: https://andrewsforest.oregonstate.edu/data/studies/ms045/hobo_workflow_instruction_files.zipTitle: Sunrise-sunset tableDescription: Table by day of year for sunrise and sunset times in Pacific Daylight TimeURL: https://andrewsforest.oregonstate.edu/data/studies/ms045/hja_daylength_pdt.csvTitle: hja_hobo_clean Python programDescription: The repository that hosts the code needed to process, flag and clean HOBO-collected data records from the H.J. Andrews Experimental Forest.URL: https://bitbucket.org/hjandrews/hja_hobo_clean/src/master/Title: Python workflow for vertical tree dataDescription: Includes instructions on how to run the Python code for vertical tree data, including yaml and wheel files, which can be adjusted by the user to change the flagging of the data, and the definition of flags used in the Python QAQC file.URL: https://andrewsforest.oregonstate.edu/data/studies/mv008/python_workflow_tree_program_files.zipTitle: Vertical tree HOBO informationDescription: Information on each site with an instrumented tree (includes coordinates, elevation, number of loggers, height of highest logger, tree species and dbh)URL: https://andrewsforest.oregonstate.edu/sites/default/files/lter/data/studies/mv008/Tree_HOBOs_HJA_bird.csv Data Use Agreement: The re-use of scientific data has the potential to greatly increase communication, collaboration and synthesis within and among disciplines, and thus is fostered, supported and encouraged. This Data Set is released under the Creative Commons license CC BY "Attribution" (see: https://creativecommons.org/licenses/by/4.0/). Creative Commons license CC BY - Attribution is a license that allows others to distribute, remix, tweak, and build upon your work (even commercially), as long as you are credited for the original creation. This license accommodates maximum dissemination and use of licensed materials. It is considered professional conduct and an ethical obligation to acknowledge the work of other scientists. The Data User is asked to provide attribution of the original work if this data package is shared in whole or by individual parts or used in the derivation of other products. A recommended citation is provided for each Data Set in the Andrews LTER data catalog (see: http://andlter.forestry.oregonstate.edu/data/catalog/datacatalog.aspx). A generic citation is also provided for this Data Set on the website https://portal.edirepository.org in the summary metadata page. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed and all data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. General acknowledgement: Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. Data from years 2018 and 2019 are restricted due to publication in process. Data can be obtained from Sarah Frey. http://andlter.forestry.oregonstate.edu/data/abstract.aspx?dbcode=MV008 Geographic Extent: H. J. Andrews Experimental Forest, Western Cascades, Oregon -122.24967644 -122.12174888 44.27447074 44.21401836 488 1334 meter 2011-07-01 2019-06-30 All Organisms All Organisms Highest common category (ca. kingdom) Plantae Division or Phylum Magnoliophyta Class Magnoliopsida Subclass Rosidae Order Sapindales Family Aceraceae Genus Acer Species Acer macrophyllum Division or Phylum Coniferophyta Class Pinopsida Order Pinales Family Pinaceae Genus Tsuga Species Tsuga heterophylla Genus Pseudotsuga Species Pseudotsuga menziesii This study is intended to understand vertical temperature profiles and their spatial patterns in relation to forest structure and landscape context.

An update history is logged and maintained with each new version of every dataset.

annually Study code and preliminary metadata established Version1 2017-10-03 Original creation of entity. Shares attributes with MS04505 and MS03602, which is output from the Python workflow program. Output included 73 files with site and sensor height in filename. Imported these files into database, ran QC, uploaded to SQL. Data is restricted for 2018-2019 pending publication. Version2 2020-02-18 Information Manager

Andrews Forest LTER Program US Forest Service Pacific Northwest Research Station 3200 SW Jefferson Way Corvallis OR 97331

hjaweb@fsl.orst.edu http://andrewsforest.oregonstate.edu/ Sarah J. K. Frey

Forest Ecosystems and Society;Oregon State University Corvallis OR 97331

sjkfrey@gmail.com Andrews Forest LTER Site

Forest Ecosystems and Society Department in Forestry Oregon State University 201K Richardson Hall Corvallis OR 97331-5752

(541) 737-8480 lterweb@fsl.orst.edu http://andrewsforest.oregonstate.edu/ Field Methods - MV008 Each of the 11 trees selected were rigged to set up temperature and light sensors up through the canopy. Loggers were installed using a pulley system and parachute cord so that downloading data and changing batteries is easily accomplished. Half of a 3-inch diameter schedule 40 PVC pipe, cut to 6-in in length for a sun shield was used at each HOBO sensor. All temperature loggers were oriented to face south using a compass (and within what was physically possible based on the parachute cord). Temperature was programmed to be recorded every 20 minutes. The 1.5 meter sensor data is from data collected in MS045 study where temperature resolution is every 20 minutes at the bird sites and every 15 minutes at the vegetation sites. Data is download from the units 1-2 times a year (May - August) and change of batteries once a year based on sampling frequency (generally on the second offload session of each year). Models/Algorithms - MV008 A Python workflow, which includes instructions on how the Python code is run, including the yaml and wheel file to be used in the Python code, which can be adjusted by the user to change the flagging of the data, and the definition of flags used in the Python QAQC file. Processing Procedures - MV008 There is a version of the data offline, but available, that have had a light-adjustment applied based on the illumination values in order to account for bias in the temperature measurements created by light hitting the sensor shield. The light adjustment is based on paired light and temperature measurements, from the Discovery Tree (see document hobo_correction_181012.pdf). It is Corrected air T = 0.2267*(lux/1000) + 0.04955 or y = 0.1987x + 0.0726. This light adjustment was applied to the cleaned version of the dataset. Quality Assurance - MV008 These data are run through a locally developed Python program QAQC procedure. These data have only been flagged and include extreme values, gaps, spikes and possible snow indication. Some visual inspection of the data using a visualization tool occurred. The Python program can create cleaned and filled versions of the data based on specified parameters. More information on this is found in the supplementary documents (Python workflow, Python flag definitions). Sampling frequency: 15 or 20 minutes Eleven sites (of the 184 existing sites where temperature and bird data are collected) were chosen for instrumentation of HOBO temperature loggers up through the canopy. Site selection was based on elevation, landscape position, and forest type. Six of the 11 sites are located in old-growth forest and five are located in plantation forest. Loggers were spaced at 5-m intervals starting at 6.5 m, which is 5 m higher than the original 1.5 m logger at these sites. The tallest logger at each site depended on the forest canopy height and the height of the individual tree that the loggers were placed in (ranges from 11.5 m to 46.5 m). Sites are grouped into low elevation (487, 556, 567, 622, 687 m) and high elevation (979, 1082, 1184, 1301, 1301, 1339 m). Andrews Experimental Forest (HJA) -122.26172200 -122.10084700 44.28196400 44.19770400 1631 1631 meter HJA Phenology Auxiliary Site 348 -122.22177685 -122.22177685 44.22702550 44.22702550 556 556 meter HJA Phenology Core Bird Site 008 -122.19667703 -122.19667703 44.23132630 44.23132630 621 621 meter HJA Phenology Core Bird Site 014 -122.19440011 -122.19440011 44.21465447 44.21465447 1184 1184 meter HJA Phenology Core Bird Site 325 -122.20212813 -122.20212813 44.23286802 44.23286802 567 567 meter HJA Phenology Core Bird Site 326 -122.17388412 -122.17388412 44.23158688 44.23158688 687 687 meter HJA Phenology Core Site 002 (CS2MET/RS07) -122.24967644 -122.24967644 44.21401836 44.21401836 488 488 meter HJA Phenology Core Site 009 (RS12) -122.12174888 -122.12174888 44.22717245 44.22717245 979 979 meter HJA Phenology Core Site 011 (L303/371 RD 350) -122.15130105 -122.15130105 44.25067222 44.25067222 1116 1116 meter HJA Phenology Core Site 012 (RS18) -122.15895568 -122.15895568 44.24627228 44.24627228 1081 1081 meter HJA Phenology Core Site 017 (RS04) -122.13697290 -122.13697290 44.27312824 44.27312824 1302 1302 meter HJA Phenology Core Site 018 (L306 RD 350) -122.13525278 -122.13525278 44.27447074 44.27447074 1334 1334 meter

These data are run through a locally developed Python program QAQC procedure. These data have only been flagged and include extreme values, gaps, spikes and possible snow indication. Some visual inspection of the data using a visualization tool occurred. The Python program can create cleaned and filled versions of the data based on specified parameters. More information on this is found in the supplementary documents (Python workflow, Python flag definitions).

Sherri L. Johnson

US Forest Service ;Pacific NW Research Station ;3200 SW Jefferson Way Corvallis OR 97331 USA

541-758-7771 sherri.johnson2@usda.gov sherri.johnson@oregonstate.edu https://www.fs.fed.us/research/people/profile.php?alias=sherrijohnson Principal Investigator Julia A. Jones

Oregon State University;Department of Geosciences; Wilkinson Hall 104 Corvallis OR 97331-5506 USA

(541) 737-1224 Julia.Jones@oregonstate.edu geojulia@comcast.net http://ceoas.oregonstate.edu/profile/jones/ http://orcid.org/0000-0001-9429-8925 Principal Investigator Matthew G Betts

Department of Forest Ecosystems and Society; 201E Richardson Hall; College of Forestry; Oregon State University Corvallis OR 97331

(541) 737-3841 matt.betts@oregonstate.edu http://www.fsl.orst.edu/flel/index.htm Principal Investigator Michael P. Nelson

Department of Forest Ecosystems and Society; 201K Richarson Hall; College of Forestry; Oregon State University Corvallis OR 97331

541-737-9221 mpnelson@oregonstate.edu http://www.michaelpnelson.com http://orcid.org/0000-0001-6917-4752 Principal Investigator David Bell david.bell@usda.gov david.bell@oregonstate.edu https://lemma.forestry.oregonstate.edu/about/david-bell Principal Investigator The H.J. Andrews Experimental Forest is a living laboratory that provides unparalleled opportunities for the study of forest and stream ecosystems in the central Cascade Range of Oregon. Since 1980, as a part of the National Science Foundation Long Term Ecological Research (NSF-LTER) program, the Andrews Experimental Forest has become a leader in the analysis of forest and stream ecosystem dynamics. Long-term field experiments and measurement programs have focused on climate dynamics, streamflow, water quality, and vegetation succession. Currently researchers are working to develop concepts and tools needed to predict effects of natural disturbance, land use, and climate change on ecosystem structure, function, and species composition. The Andrews Experimental Forest is administered cooperatively by the USDA Forest Service Pacific Northwest Research Station, Oregon State University and the Willamette National Forest. Funding for the research program comes from the National Science Foundation (NSF), US Forest Service Pacific Northwest Research Station, Oregon State University, and other sources. Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. National Science Foundation: DEB1440409 The Andrews Forest is situated in the western Cascade Range of Oregon, and covers the entire 15,800-acre (6400-ha) drainage basin of Lookout Creek. Elevation ranges from 1350 to 5340 feet (410 to 1630 m). Broadly representative of the rugged mountainous landscape of the Pacific Northwest, the Andrews Forest contains excellent examples of the region's conifer forests and associated wildlife and stream ecosystems. These forests are among the tallest and most productive in the world, with tree heights of often greater than 250 ft (75 m). Streams are steep, cold and clean, providing habitat for numerous aquatic organisms. 1 MV00801 Fine temporal resolution air temperature and light intensity data: MV00801.txt 1023414854 b6b15c66d9c23d49416b4db12bfe3cb9 1 \r\n column , " https://andrewsforest.oregonstate.edu/fsdbdata/cache/MV00801_v1.txt 2011-07-11 2019-06-30 DBCODE FSDB Database Code char(5) MV008 FSDB Database Code MV008 ENTITY Entity number numeric(2,0) number 1 natural 1.0000 1.0000 SITECODE Site code for the measurement location char(5) PC002 HJA Phenology Core Site 002 (CS2MET/RS07) PC009 HJA Phenology Core Site 009 (RS12) PC011 HJA Phenology Core Site 011 (L303/371 RD 350) PC012 HJA Phenology Core Site 012 (RS18) PC017 HJA Phenology Core Site 017 (RS04) PC018 HJA Phenology Core Site 018 (L306 RD 350) PA348 HJA Phenology Auxiliary Site 348 PB008 HJA Phenology Core Bird Site 008 PB014 HJA Phenology Core Bird Site 014 PB325 HJA Phenology Core Bird Site 325 PB326 HJA Phenology Core Bird Site 326 QC_LEVEL Quality control flag indicates level of quality checking performed char(2) 1A Data is published and unlikely to change - automated range checking and manual review has been conducted. 1D Data is published and unlikely to change - data is derived or aggregated from published data of level 1A 2A Data is published and unlikely to change - Level 1A data has been modified such that data gaps may be filled or problem data may be removed 2D Data is published and unlikely to change - data is derived or aggregated from published data of level 2A DATE_TIME Date and time in Pacific Standard Time (PST) of measurement datetime YYYY-MM-DD hh:mm:ss 7/1/2011 12:00:00 AM 7/1/2019 12:00:00 AM SENSOR_HT Height of the sensor on the tree numeric(4,1) meters 1 real 1.5000 46.5000 PROBE_CODE Probe code indicates that site and sensor height char(8) PA348015 Site PA348 at height 1.5 meters above ground PA348065 Site PA348 at height 6.5 meters above ground PA348115 Site PA348 at height 11.5 meters above ground PA348165 Site PA348 at height 16.5 meters above ground PA348215 Site PA348 at height 21.5 meters above ground PA348265 Site PA348 at height 26.5 meters above ground PA348315 Site PA348 at height 31.5 meters above ground PA348365 Site PA348 at height 36.5 meters above ground PB008015 Site PB008 at height 1.5 meters above ground PB008065 Site PB008 at height 6.5 meters above ground PB008115 Site PB008 at height 11.5 meters above ground PB008165 Site PB008 at height 16.5 meters above ground PB008215 Site PB008 at height 21.5 meters above ground PB014015 Site PB014 at height 1.5 meters above ground PB014065 Site PB014 at height 6.5 meters above ground PB014115 Site PB014 at height 11.5 meters above ground PB014165 Site PB014 at height 16.5 meters above ground PB014215 Site PB014 at height 21.5 meters above ground PB014265 Site PB014 at height 26.5 meters above ground PB014315 Site PB014 at height 31.5 meters above ground PB014365 Site PB014 at height 36.5 meters above ground PB014415 Site PB014 at height 41.5 meters above ground PB014465 Site PB014 at height 46.5 meters above ground PB325015 Site PB325 at height 1.5 meters above ground PB325065 Site PB325 at height 6.5 meters above ground PB325115 Site PB325 at height 11.5 meters above ground PB325165 Site PB325 at height 16.5 meters above ground PB325215 Site PB325 at height 21.5 meters above ground PB325265 Site PB325 at height 26.5 meters above ground PB326015 Site PB326 at height 1.5 meters above ground PB326065 Site PB326 at height 6.5 meters above ground PB326115 Site PB326 at height 11.5 meters above ground PB326165 Site PB326 at height 16.5 meters above ground PC002015 Site PC002 at height 1.5 meters above ground PC002065 Site PC002 at height 6.5 meters above ground PC002115 Site PC002 at height 11.5 meters above ground PC002165 Site PC002 at height 16.5 meters above ground PC002215 Site PC002 at height 21.5 meters above ground PC002265 Site PC002 at height 26.5 meters above ground PC002315 Site PC002 at height 31.5 meters above ground PC002365 Site PC002 at height 36.5 meters above ground PC002415 Site PC002 at height 41.5 meters above ground PC009015 Site PC009 at height 1.5 meters above ground PC009065 Site PC009 at height 6.5 meters above ground PC009115 Site PC009 at height 11.5 meters above ground PC009165 Site PC009 at height 16.5 meters above ground PC009215 Site PC009 at height 21.5 meters above ground PC009265 Site PC009 at height 26.5 meters above ground PC009315 Site PC009 at height 31.5 meters above ground PC009365 Site PC009 at height 36.5 meters above ground PC011015 Site PC011 at height 1.5 meters above ground PC011065 Site PC011 at height 6.5 meters above ground PC011115 Site PC011 at height 11.5 meters above ground PC012015 Site PC012 at height 1.5 meters above ground PC012065 Site PC012 at height 6.5 meters above ground PC012115 Site PC012 at height 11.5 meters above ground PC012165 Site PC012 at height 16.5 meters above ground PC012215 Site PC012 at height 21.5 meters above ground PC012265 Site PC012 at height 26.5 meters above ground PC012315 Site PC012 at height 31.5 meters above ground PC012365 Site PC012 at height 36.5 meters above ground PC012415 Site PC012 at height 41.5 meters above ground PC017015 Site PC017 at height 1.5 meters above ground PC017065 Site PC017 at height 6.5 meters above ground PC017115 Site PC017 at height 11.5 meters above ground PC017165 Site PC017 at height 16.5 meters above ground PC017215 Site PC017 at height 21.5 meters above ground PC017265 Site PC017 at height 26.5 meters above ground PC017315 Site PC017 at height 31.5 meters above ground PC017365 Site PC017 at height 36.5 meters above ground PC018015 Site PC018 at height 1.5 meters above ground PC018065 Site PC018 at height 6.5 meters above ground PC018115 Site PC018 at height 11.5 meters above ground AIRTEMP_INST Instantaneous air temperature recorded on a specified interval (e.g., every 15 or 20 minutes) numeric(8,3) degrees Celsius 1 real -55.0090 398.6640 -999.999 Missing value code INTENSITY Light intensity measured under the PVC shield on a specified interval (e.g., every 15 or 20 minutes) numeric(7,0) lux 1 integer 0.0000 330669.0000 -999 Missing value code DAYLIGHT An indication of day vs night, daylight hour based on sunrise/sunset table char(1) 0 Night 1 Day TIME_GAP Time gap flag char(1) 0 No time gap in data 1 Time interval between measurements is greater than the threshold (15 or 20 minutes) EXTREME_TEMP Extreme temperature flag char(1) 0 Temperature change relative to prior reading is within prescribed range 1 Temperature change relative to prior reading is outside the possible range (greater tha 42 or less than or equal to -20 degrees C) JUMP Temperature jump flag char(1) 0 Temperature change relative to prior reading is within prescribed range 1 Temperature change greater than 5 degrees C relative to prior reading EXTREME_INTENSITY Extreme intensity flag char(1) 0 Light intensity value is within the prescribed range 1 Light intensity reading is an impossible value (greater than 40,000 lux) 9 Light intensity is not measured (no sensor present) HIGH_INTENSITY High intensity flag char(1) 0 Light intensity value is within the prescribed range 1 Light intensity value likely associated with greater than or equal to 3 degree C bias relative to aspirated sensor (greater than 18,000 lux) 9 Light intensity is not measured (no sensor present) RADIATION_BIAS_INTENSITY Radiation bias flag char(1) 0 Light intensity value is within the prescribed range 1 Light intensity value likely associated with greater than or equal to 1.5 degree C bias relative to aspirated sensor (greater than 7000 lux) 9 Light intensity is not measured (no sensor present) LOW_DAYLIGHT_INTENSITY Low daylight flag char(1) 0 Light intensity value is within the prescribed range 1 Light intensity reading less than or equal to 0 during daylight hours 9 Light intensity is not measured (no sensor present) NIGHTTIME_INTENSITY Nightime intensity reading flag char(1) 0 Light intensity value is within the prescribed range 1 Light intensity reading greater than or equal to 0.1 lux during nighttime hours (defined as outside of daylight) 9 Light intensity is not measured (no sensor present) SNOW Snow flag char(1) 0 Snow is not affecting the temperature sensor reading 1 Temperature within plus or minus 0.7 degrees C for 2 days indicating that the sensor might be buried under snow TEMP_SPIKE Temperature spike flag char(1) 0 Temperature change from a 7-record (centered) median is within prescribed range 1 Temperature deviates more than 7 degrees C from a 7-record (centered) median PRIMARY MV00801.DATE_TIME MV00801.SITECODE MV00801.SENSOR_HT MV00801.PROBE_CODE NOTNULL MV00801.QC_LEVEL MV00801.DAYLIGHT MV00801.TIME_GAP MV00801.EXTREME_TEMP MV00801.JUMP MV00801.EXTREME_INTENSITY MV00801.HIGH_INTENSITY MV00801.RADIATION_BIAS_INTENSITY MV00801.LOW_DAYLIGHT_INTENSITY MV00801.NIGHTTIME_INTENSITY MV00801.SNOW MV00801.TEMP_SPIKE MV00801.DBCODE MV00801.ENTITY MV00801.DATE_TIME MV00801.SITECODE MV00801.SENSOR_HT MV00801.PROBE_CODE 11998515 Degrees Celsius; a common unit of temperature; constantToSI=273.18 lux dimensionless number, i.e., ratio, count meter; SI unit of length