uid=AND,o=lter,dc=ecoinformatics,dc=org all public read WE027 Steven L. Garman

USA

SLGarman@usgs.gov Steven L. Garman

USA

SLGarman@usgs.gov Principal Investigator Steven L. Garman

USA

SLGarman@usgs.gov Abstractor Steven L. Garman

USA

SLGarman@usgs.gov Creator 2013-08-16 Logistic regression models predicting probability of occurrence of bird and of small-mammal species were produced using animal-habitat data sets from throughout western Oregon (Garman and Cole 1999 - Vertebrate Habitat Relationships Data Bank (VHRDB), Report to Coastal Landscape Analysis and Modeling Study). Regression coefficients, variables, and metrics related to model predictions are provided here under Entity 1, and in VHRDB as VERTLOGR. habitats populations trophic structure modeling animals birds small mammals LTER controlled vocabulary Long-Term Ecological Research (LTER) Andrews Experimental Forest site thesaurus populations LTER core research areas Related PublicationsGarman, Steven L.; Cole, Eric K. 1999. Vertebrate habitat relationships data bank (VHRDB). Corvallis, OR: Oregon State University. 77 p. Data Use Agreement: The re-use of scientific data has the potential to greatly increase communication, collaboration and synthesis within and among disciplines, and thus is fostered, supported and encouraged. This Data Set is released under the Creative Commons license CC BY "Attribution" (see: https://creativecommons.org/licenses/by/4.0/). Creative Commons license CC BY - Attribution is a license that allows others to distribute, remix, tweak, and build upon your work (even commercially), as long as you are credited for the original creation. This license accommodates maximum dissemination and use of licensed materials. It is considered professional conduct and an ethical obligation to acknowledge the work of other scientists. The Data User is asked to provide attribution of the original work if this data package is shared in whole or by individual parts or used in the derivation of other products. A recommended citation is provided for each Data Set in the Andrews LTER data catalog (see: http://andlter.forestry.oregonstate.edu/data/catalog/datacatalog.aspx). A generic citation is also provided for this Data Set on the website https://portal.edirepository.org in the summary metadata page. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed and all data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. General acknowledgement: Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. http://andlter.forestry.oregonstate.edu/data/abstract.aspx?dbcode=WE027 1998-01-01 1999-01-01 All Organisms All Organisms Highest common category (ca. kingdom) Animalia Class Aves Order Passeriformes Family Fringillidae Genus Coccothraustes Species Coccothraustes vespertinus Genus Carduelis Species Carduelis pinus Species Carduelis tristis Genus Carpodacus Species Carpodacus purpureus Genus Loxia Species Loxia curvirostra Family Thraupidae Genus Piranga Species Piranga ludoviciana Family Regulidae Genus Regulus Species Regulus satrapa Family Certhiidae Genus Certhia Species Certhia americana Family Paridae Genus Poecile Species Poecile rufescens Family Corvidae Genus Perisoreus Species Perisoreus canadensis Genus Cyanocitta Species Cyanocitta stelleri Family Tyrannidae Genus Empidonax Family Vireonidae Genus Vireo Species Vireo gilvus Family Sittidae Genus Sitta Species Sitta canadensis Family Troglodytidae Genus Troglodytes Species Troglodytes troglodytes Family Turdidae Genus Ixoreus Species Ixoreus naevius Genus Catharus Species Catharus guttatus Species Catharus ustulatus Genus Turdus Species Turdus migratorius Family Parulidae Genus Oporornis Species Oporornis tolmiei Genus Dendroica Species Dendroica townsendi Species Dendroica coronata Species Dendroica nigrescens Species Dendroica occidentalis Genus Vermivora Species Vermivora celata Genus Wilsonia Species Wilsonia pusilla Family Emberizidae Genus Junco Species Junco hyemalis Genus Melospiza Species Melospiza melodia Genus Pipilo Species Pipilo maculatus Genus Zonotrichia Species Zonotrichia leucophrys Family Cardinalidae Genus Pheucticus Species Pheucticus melanocephalus Order Columbiformes Family Columbidae Genus Columba Species Columba fasciata Order Piciformes Family Picidae Genus Colaptes Species Colaptes auratus Genus Picoides Species Picoides villosus Genus Dryocopus Species Dryocopus pileatus Class Mammalia Genus Phenacomys Species Phenacomys longicaudus Genus Peromyscus Species Peromyscus maniculatus Genus Microtus Species Microtus oregoni Genus Clethrionomys Species Clethrionomys californicus Genus Neurotrichus Species Neurotrichus gibbsii Genus Tamias Species Tamias townsendii The goal of the Vertebrate Habitat Relationships Data Bank (VHRDB) effort was to provide an organized and documented repository of empirical wildlife-habitat data sets from throughout western Oregon.

An update history is logged and maintained with each new version of every dataset.

asNeeded Original metadata creation. Version1 1999-06-01 Metadata restructured and moved into SQLServer metadata database LTERMETA. Data moved into SQLServer database FSDBDATA. Version2 2002-03-05 Information Manager

Andrews Forest LTER Program US Forest Service Pacific Northwest Research Station 3200 SW Jefferson Way Corvallis OR 97331

hjaweb@fsl.orst.edu http://andrewsforest.oregonstate.edu/ Donald L. Henshaw

Pacific Northwest Research Station; Corvallis Forestry Sciences Lab; 3200 SW Jefferson Way Corvallis Oregon 97331

hja_admin@fsl.orst.edu http://orcid.org/0000-0001-5952-4528 Andrews Forest LTER Site

Forest Ecosystems and Society Department in Forestry Oregon State University 201K Richardson Hall Corvallis OR 97331-5752

(541) 737-8480 lterweb@fsl.orst.edu http://andrewsforest.oregonstate.edu/ Models/Algorithms - WE027 Species-specific logistic regression models predict logit(p) from habitat measures, which are used here to derive the probability of occurrence (Prob): Prob= Exp[logit(p)]/[1+Exp(logit(p))], where Prob ranges from 0 to 1. Sherri L. Johnson

US Forest Service ;Pacific NW Research Station ;3200 SW Jefferson Way Corvallis OR 97331 USA

541-758-7771 sherri.johnson2@usda.gov sherri.johnson@oregonstate.edu https://www.fs.fed.us/research/people/profile.php?alias=sherrijohnson Principal Investigator Julia A. Jones

Oregon State University;Department of Geosciences; Wilkinson Hall 104 Corvallis OR 97331-5506 USA

(541) 737-1224 Julia.Jones@oregonstate.edu geojulia@comcast.net http://ceoas.oregonstate.edu/profile/jones/ http://orcid.org/0000-0001-9429-8925 Principal Investigator Matthew G Betts

Department of Forest Ecosystems and Society; 201E Richardson Hall; College of Forestry; Oregon State University Corvallis OR 97331

(541) 737-3841 matt.betts@oregonstate.edu http://www.fsl.orst.edu/flel/index.htm Principal Investigator Michael P. Nelson

Department of Forest Ecosystems and Society; 201K Richarson Hall; College of Forestry; Oregon State University Corvallis OR 97331

541-737-9221 mpnelson@oregonstate.edu http://www.michaelpnelson.com http://orcid.org/0000-0001-6917-4752 Principal Investigator David Bell david.bell@usda.gov david.bell@oregonstate.edu https://lemma.forestry.oregonstate.edu/about/david-bell Principal Investigator The H.J. Andrews Experimental Forest is a living laboratory that provides unparalleled opportunities for the study of forest and stream ecosystems in the central Cascade Range of Oregon. Since 1980, as a part of the National Science Foundation Long Term Ecological Research (NSF-LTER) program, the Andrews Experimental Forest has become a leader in the analysis of forest and stream ecosystem dynamics. Long-term field experiments and measurement programs have focused on climate dynamics, streamflow, water quality, and vegetation succession. Currently researchers are working to develop concepts and tools needed to predict effects of natural disturbance, land use, and climate change on ecosystem structure, function, and species composition. The Andrews Experimental Forest is administered cooperatively by the USDA Forest Service Pacific Northwest Research Station, Oregon State University and the Willamette National Forest. Funding for the research program comes from the National Science Foundation (NSF), US Forest Service Pacific Northwest Research Station, Oregon State University, and other sources. Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. National Science Foundation: DEB1440409 The Andrews Forest is situated in the western Cascade Range of Oregon, and covers the entire 15,800-acre (6400-ha) drainage basin of Lookout Creek. Elevation ranges from 1350 to 5340 feet (410 to 1630 m). Broadly representative of the rugged mountainous landscape of the Pacific Northwest, the Andrews Forest contains excellent examples of the region's conifer forests and associated wildlife and stream ecosystems. These forests are among the tallest and most productive in the world, with tree heights of often greater than 250 ft (75 m). Streams are steep, cold and clean, providing habitat for numerous aquatic organisms. 1 WE02701 Vertebrate Logistic Regression Models: WE02701.csv 6074 024a572ebd262f7c06db92a0ae2bdffb 1 \r\n column , " http://andlter.forestry.oregonstate.edu/ltermeta/ltersearch/dataaccess.aspx?docid=WE02701_v2.csv STCODE Study code char(5) Study code FORMAT Format numeric(1,0) number 1.000000 natural 1.0000 1.0000 PROVENCE Provence char(4) ORCA Oregon Cascade Range ORCO Oregon Coast Range TAXA Taxa char(1) 1 Birds 2 Mammals SPECIES Species code char(5) BTPI Columba fasciata HAWO Picoides villosus NOFL Colaptes auratus PIWO Dryocopus pileatus EMFL Empidonax PSFL Empidonax difficilis WAVI Vireo gilvus GRJA Perisoreus canadensis STJA Cyanocitta stelleri CBCH Poecile rufescens RBNU Sitta canadensis BRCR Certhia americana WIWR Troglodytes troglodytes GCKI Regulus satrapa SWTH Catharus ustulatus HETH Catharus guttatus AMRO Turdus migratorius VATH Ixoreus naevius OCWA Vermivora celata YRWA Dendroica coronata BTYW Dendroica nigrescens TOWA Dendroica townsendi HEWA Dendroica occidentalis MGWA Oporornis tolmiei WIWA Wilsonia pusilla WETA Piranga ludoviciana SPTO Pipilo maculatus SOSP Melospiza melodia WCSP Zonotrichia leucophrys DEJU Junco hyemalis BHGR Pheucticus melanocephalus PUFI Carpodacus purpureus RECR Loxia curvirostra PISI Carduelis pinus AMGO Carduelis tristis EVGR Coccothraustes vespertinus CLCA Clethrionomys californicus MIOR Microtus oregoni NEGI Neurotrichus gibbsii PEMA Peromyscus maniculatus TATO Tamias townsendii PHLO Phenacomys longicaudus ABSENT Numbers of stations not recording the species numeric(3,0) number 1.000000 natural 10.0000 124.0000 PRESENT Numbers of stations recording the species numeric(3,0) number 1.000000 natural 12.0000 129.0000 CE Classification efficiency numeric(7,2) percent 0.010000 real 58.7000 98.0000 SIGNIF Significance level char(1) 1 P<0.05 2 P<0.025 3 P<0.01 4 P<0.001 5 P<0.001 OM Omission error numeric(7,2) percent 0.010000 real 1.4000 30.8000 CO Commision error numeric(7,2) percent 0.010000 real 0.0000 31.5000 B0 Intercept term numeric(10,5) number 0.000010 real -9.6161 4.1207 B1 Var1 coefficient numeric(10,5) number 0.000010 real -1.2653 5.1626 VAR1 First variable char(10) CHDI Canopy Height Diversity Index (see VHRDB report) CT1-5 Density (no./ha) of all conifer stems CT2-3 Density (no./ha) of conifer stems 11-50cm dbh CT2-5 Density (no./ha) of conifer stems >10cm dbh CT3 Density (no./ha) of conifer stems 31-50cm dbh CT3-5 Density (no./ha) of conifer stems >30cm dbh CT4-5 Density (no./ha) of conifer stems >50cm dbh CT5 Density (no./ha) of conifer stems >90cm dbh HT1 Density (no./ha) of hardwood stems 2-10cm dbh HT1-5 Density (no./ha) of all hardwood stems HT2 Density (no./ha) of hardwood stems 11-30cm dbh HT2-5 Density (no./ha) of harwdoos stems >10cm dbh LOGSS Density (no./ha) of logs 10-30cm large-end diameter, decay classes 2-5 PHT1-5 (density of hardwood stems/total stem density)*100 PHT2-3 (density of hardwood stems 11-50cm dbh/total stem density)*100 PTot1 (density of stems 2-10cm dbh/total stem density)*100 PTot2 (density of stems 11-30cm dbh/total stem density)*100 PTot2-5 (density of stems >10-cm dbh/total stem density)*100 PTot4 (density of stems 51-90cm dbh/ total stem density)*100 PTot4-5 (density of stems >50cm dbh/total stem density)*100 PTot5 (density of stems >90cm dbh/total stem density)*100 Shrub Percent shrub cover SnagL Density (no./ha) of snags >50-cm dbh, >3-m tall SnagS Density (no./ha) of snags 10-30cm dbh, >3-m tall, all decay classes Soft10 Density (no./ha) of snags 10-30cm dbh, >3-m tall, decay classes 3-5 T1T45 Density of stems 2-10cm dbh/density of stems >50cm dbh T1T5 Density of stems 2-10cm dbh/density of stems >90cm Tot1 Density (no./ha) of stems 2-10cm dbh Tot1-5 Density (no./ha) of all stems Tot2 Density (no./ha) of stems 11-30cm dbh Tot2-5 Density (no./ha) of stems >10cm dbh Tot3-5 Density )no./ha) of stems >30cm dbh Tot4-5 Density (no./ha) of stems >50cm dbh Tot5 Density (no./ha) of stems >90cm dbh TotSn Density (no./ha) of snags >10cm dbh, >3-m tall, all decay classes na Not applicable B2 Var2 coefficient numeric(10,5) number 0.000010 real -0.3297 0.5930 VAR2 Second variable char(10) CHDI Canopy Height Diversity Index (see VHRDB report) CT1-5 Density (no./ha) of all conifer stems CT2-3 Density (no./ha) of conifer stems 11-50cm dbh CT2-5 Density (no./ha) of conifer stems >10cm dbh CT3 Density (no./ha) of conifer stems 31-50cm dbh CT3-5 Density (no./ha) of conifer stems >30cm dbh CT4-5 Density (no./ha) of conifer stems >50cm dbh CT5 Density (no./ha) of conifer stems >90cm dbh HT1 Density (no./ha) of hardwood stems 2-10cm dbh HT1-5 Density (no./ha) of all hardwood stems HT2 Density (no./ha) of hardwood stems 11-30cm dbh HT2-5 Density (no./ha) of harwdoos stems >10cm dbh LOGSS Density (no./ha) of logs 10-30cm large-end diameter, decay classes 2-5 PHT1-5 (density of hardwood stems/total stem density)*100 PHT2-3 (density of hardwood stems 11-50cm dbh/total stem density)*100 PTot1 (density of stems 2-10cm dbh/total stem density)*100 PTot2 (density of stems 11-30cm dbh/total stem density)*100 PTot2-5 (density of stems >10-cm dbh/total stem density)*100 PTot4 (density of stems 51-90cm dbh/ total stem density)*100 PTot4-5 (density of stems >50cm dbh/total stem density)*100 PTot5 (density of stems >90cm dbh/total stem density)*100 Shrub Percent shrub cover SnagL Density (no./ha) of snags >50-cm dbh, >3-m tall SnagS Density (no./ha) of snags 10-30cm dbh, >3-m tall, all decay classes Soft10 Density (no./ha) of snags 10-30cm dbh, >3-m tall, decay classes 3-5 T1T45 Density of stems 2-10cm dbh/density of stems >50cm dbh T1T5 Density of stems 2-10cm dbh/density of stems >90cm Tot1 Density (no./ha) of stems 2-10cm dbh Tot1-5 Density (no./ha) of all stems Tot2 Density (no./ha) of stems 11-30cm dbh Tot2-5 Density (no./ha) of stems >10cm dbh Tot3-5 Density )no./ha) of stems >30cm dbh Tot4-5 Density (no./ha) of stems >50cm dbh Tot5 Density (no./ha) of stems >90cm dbh TotSn Density (no./ha) of snags >10cm dbh, >3-m tall, all decay classes na Not applicable B3 Var3 coefficient numeric(10,5) number 0.000010 real -0.0306 0.1996 VAR3 Third variable char(10) CHDI Canopy Height Diversity Index (see VHRDB report) CT1-5 Density (no./ha) of all conifer stems CT2-3 Density (no./ha) of conifer stems 11-50cm dbh CT2-5 Density (no./ha) of conifer stems >10cm dbh CT3 Density (no./ha) of conifer stems 31-50cm dbh CT3-5 Density (no./ha) of conifer stems >30cm dbh CT4-5 Density (no./ha) of conifer stems >50cm dbh CT5 Density (no./ha) of conifer stems >90cm dbh HT1 Density (no./ha) of hardwood stems 2-10cm dbh HT1-5 Density (no./ha) of all hardwood stems HT2 Density (no./ha) of hardwood stems 11-30cm dbh HT2-5 Density (no./ha) of harwdoos stems >10cm dbh LOGSS Density (no./ha) of logs 10-30cm large-end diameter, decay classes 2-5 PHT1-5 (density of hardwood stems/total stem density)*100 PHT2-3 (density of hardwood stems 11-50cm dbh/total stem density)*100 PTot1 (density of stems 2-10cm dbh/total stem density)*100 PTot2 (density of stems 11-30cm dbh/total stem density)*100 PTot2-5 (density of stems >10-cm dbh/total stem density)*100 PTot4 (density of stems 51-90cm dbh/ total stem density)*100 PTot4-5 (density of stems >50cm dbh/total stem density)*100 PTot5 (density of stems >90cm dbh/total stem density)*100 Shrub Percent shrub cover SnagL Density (no./ha) of snags >50-cm dbh, >3-m tall SnagS Density (no./ha) of snags 10-30cm dbh, >3-m tall, all decay classes Soft10 Density (no./ha) of snags 10-30cm dbh, >3-m tall, decay classes 3-5 T1T45 Density of stems 2-10cm dbh/density of stems >50cm dbh T1T5 Density of stems 2-10cm dbh/density of stems >90cm Tot1 Density (no./ha) of stems 2-10cm dbh Tot1-5 Density (no./ha) of all stems Tot2 Density (no./ha) of stems 11-30cm dbh Tot2-5 Density (no./ha) of stems >10cm dbh Tot3-5 Density )no./ha) of stems >30cm dbh Tot4-5 Density (no./ha) of stems >50cm dbh Tot5 Density (no./ha) of stems >90cm dbh TotSn Density (no./ha) of snags >10cm dbh, >3-m tall, all decay classes na Not applicable PRIMARY WE02701.PROVENCE WE02701.SPECIES WE02701.TAXA NOTNULL WE02701.ABSENT WE02701.B0 WE02701.B1 WE02701.CE WE02701.CO WE02701.FORMAT WE02701.OM WE02701.PRESENT WE02701.PROVENCE WE02701.SIGNIF WE02701.SPECIES WE02701.STCODE WE02701.TAXA WE02701.VAR1 60 percent; a number dimensionless number, i.e., ratio, count