HS005: Nutrient and microbial characteristics of mountain stream fine benthic organic matter in the H.J. Andrews Experimental Forest, 1995 to 1996
Notice
"As Is" Basis: All content, including maps and forecasts, is provided without warranties. Users are advised to independently verify critical information.
Citation
Griffiths, R.; Bonin, H. 2013. Nutrient and microbial characteristics of mountain stream fine benthic organic matter in the H.J. Andrews Experimental Forest, 1995 to 1996 Long-Term Ecological Research Andrews Forest LTER Site. [Database]. Available: https://andrewsforest-stage.forestry.oregonstate.edu/data/fsdb-data-catalog/HS005 Accessed 2026-05-10.
Abstract
Numerous studies have examined qualitative shifts in leaf litter composition in the early to middle stages of decomposition. (Suberkropp, Godshalk and Klug 1976, Petersen and Cummins 1974, Findlay and Arsuffi 1989) which have shown that changes in leaf species and composition lead to marked differences in microbial processing rates (Suberkropp and Klug 1976) and that leaf and woody debris decomposition rates are related to both litter C:N and extracellular enzyme activities (Taylor et al. 1989, Sinsabaugh et al. 1992, Sinsabaugh and Linkins 1993). Since most organic matter moves through streams as fine particulate organic matter (FPOM) (Sinsabaugh et al. 1992) it is a potentially important link between terrestrial and aquatic environments. Although there is increasing interest in understanding FPOM dynamics, there have been few studies of factors influencing stream sediment FBOM chemical or microbial characteristics.
Coverage
Temporal coverage: 1995-08-09 to 1996-05-12
Geographic coverage: H.J. Andrews Experimental Forest
Spatial coverage:
Bounds: W -122.26172200, E -122.10084700, N 44.28196400, S 44.19770400
Purpose
- The purpose of this study was to examine the fundamental relationship between FBOM nutrient availability, or substrate quality, and microdecomposer activity and to investigate the link between organic matter inputs and FBOM substrate quality. To this end, we compared the qualitative characteristics of FBOM from streams flowing through stands with riparian zones dominated by coniferous, deciduous (red alder) or herbaceous vegetation at two elevations for one year.
Project
Title: Long-Term Ecological Research
Personnel
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Sherri L. Johnson - Principal Investigator US Forest Service ;Pacific NW Research Station ;3200 SW Jefferson Way, Corvallis, OR, 97331, USAPhone: 541-758-7771Email: sherri.johnson2@usda.gov, sherri.johnson@oregonstate.edu
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Julia A. Jones - Principal Investigator Oregon State University;Department of Geosciences; Wilkinson Hall 104, Corvallis, OR, 97331-5506, USAPhone: (541) 737-1224Email: Julia.Jones@oregonstate.edu, geojulia@comcast.netORCID: http://orcid.org/0000-0001-9429-8925
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Matthew G Betts - Principal Investigator Department of Forest Ecosystems and Society; 201E Richardson Hall; College of Forestry; Oregon State University, Corvallis, OR, 97331Phone: (541) 737-3841Email: matt.betts@oregonstate.edu
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Michael P. Nelson - Principal Investigator Department of Forest Ecosystems and Society; 201K Richarson Hall; College of Forestry; Oregon State University, Corvallis, OR, 97331Phone: 541-737-9221Email: mpnelson@oregonstate.eduORCID: http://orcid.org/0000-0001-6917-4752
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David Bell - Principal Investigator Email: david.bell@usda.gov, david.bell@oregonstate.edu
Abstract
- The H.J. Andrews Experimental Forest is a living laboratory that provides unparalleled opportunities for the study of forest and stream ecosystems in the central Cascade Range of Oregon. Since 1980, as a part of the National Science Foundation Long Term Ecological Research (NSF-LTER) program, the Andrews Experimental Forest has become a leader in the analysis of forest and stream ecosystem dynamics.
- Long-term field experiments and measurement programs have focused on climate dynamics, streamflow, water quality, and vegetation succession. Currently researchers are working to develop concepts and tools needed to predict effects of natural disturbance, land use, and climate change on ecosystem structure, function, and species composition.
- The Andrews Experimental Forest is administered cooperatively by the USDA Forest Service Pacific Northwest Research Station, Oregon State University and the Willamette National Forest. Funding for the research program comes from the National Science Foundation (NSF), US Forest Service Pacific Northwest Research Station, Oregon State University, and other sources.
Funding
Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. National Science Foundation: DEB1440409
Study Area Description
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Long-Term Ecological Research The Andrews Forest is situated in the western Cascade Range of Oregon, and covers the entire 15,800-acre (6400-ha) drainage basin of Lookout Creek. Elevation ranges from 1350 to 5340 feet (410 to 1630 m). Broadly representative of the rugged mountainous landscape of the Pacific Northwest, the Andrews Forest contains excellent examples of the region's conifer forests and associated wildlife and stream ecosystems. These forests are among the tallest and most productive in the world, with tree heights of often greater than 250 ft (75 m). Streams are steep, cold and clean, providing habitat for numerous aquatic organisms.
Associated Party
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Robert P. Griffiths
Role: Principal InvestigatorOregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USAPhone: (541) 737-6559Email: bbgriff@peak.org, griff@for.orst.edu
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Bruce A. Caldwell
Role: Other ResearcherOregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USAPhone: (541) 737-3674Email: bruce.caldwell@oregonstate.edu
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Heather L. Bonin
Role: Abstractor
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Robert P. Griffiths
Role: CreatorOregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USAPhone: (541) 737-6559Email: bbgriff@peak.org, griff@for.orst.edu
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Heather L. Bonin
Role: Creator
Contact
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Information Manager
Andrews Forest LTER Program, US Forest Service Pacific Northwest Research Station, 3200 SW Jefferson Way, Corvallis, OR, 97331Email: hjaweb@fsl.orst.edu
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Robert P. Griffiths
Oregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USAPhone: (541) 737-6559Email: bbgriff@peak.org, griff@for.orst.edu
Publisher
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Andrews Forest LTER Site
Role: PublisherForest Ecosystems and Society Department in Forestry, Oregon State University, 201K Richardson Hall, Corvallis, OR, 97331-5752Phone: (541) 737-8480Email: lterweb@fsl.orst.edu
Study Description
Numerous studies have examined qualitative shifts in leaf litter composition in the early to middle stages of decomposition. (Suberkropp, Godshalk and Klug 1976, Petersen and Cummins 1974, Findlay and Arsuffi 1989) which have shown that changes in leaf species and composition lead to marked differences in microbial processing rates (Suberkropp and Klug 1976) and that leaf and woody debris decomposition rates are related to both litter C:N and extracellular enzyme activities (Taylor et al. 1989, Sinsabaugh et al. 1992, Sinsabaugh and Linkins 1993). Since most organic matter moves through streams as fine particulate organic matter (FPOM) (Sinsabaugh et al. 1992) it is a potentially important link between terrestrial and aquatic environments. Although there is increasing interest in understanding FPOM dynamics, there have been few studies of factors influencing stream sediment FBOM chemical or microbial characteristics. The purpose of this study was to examine the fundamental relationship between FBOM nutrient availability, or substrate quality, and microdecomposer activity and to investigate the link between organic matter inputs and FBOM substrate quality. To this end, we compared the qualitative characteristics of FBOM from streams flowing through stands with riparian zones dominated by coniferous, deciduous (red alder) or herbaceous vegetation at two elevations for one year. Field Methods - HS005
Purpose: The purpose of this study was to examine the fundamental relationship between FBOM nutrient availability, or substrate quality, and microdecomposer activity and to investigate the link between organic matter inputs and FBOM substrate quality. To this end, we compared the qualitative characteristics of FBOM from streams flowing through stands with riparian zones dominated by coniferous, deciduous (red alder) or herbaceous vegetation at two elevations for one year.
Methods
Method Steps
Field Methods - HS005
- Sample collection, preparation, and storage:
- FBOM was collected from stream beds with a hand vacuum pump into a 2 L collecting jar. The intake line was fitted with a 1 mm stainless steel screen, allowing benthic material to be wet-sieved during sampling. Samples were transferred to polystyrene jars (500 ml) and stored during field sampling in an insulated chest with stream water and ice. In the laboratory, a slurry was prepared by decanting excess stream water from the jars and mixing, keeping FBOM suspended while subsampling. Subsamples were dispensed using 1, 3, or 5 ml plastic syringes with enlarged openings. All laboratory analyses involving slurry began immediately upon return from FBOM collection which took 8-12 hours.
Laboratory Methods - HS005
- Because of significant perturbation (e.g., suction, sieving, mixing, and preparing slurries) of FBOM during sampling and subsampling, we performed laboratory analyses described in the following sections to measure potential activity rates. These rates do not reflect in-stream FBOM activity rates, but rather give us a relative sense of the variability of rates among treatments and over time.
- Denitrification potential was determined as NO emission by anaerobically incubating FBOM supplemented with glucose and NaNO (Martin et al., 1988). Duplicate 5-ml slurry samples in 25-ml Erlenmeyer flasks were capped with rubber stoppers and purged for 3 min with argon at a rate of at least 120 cc /min. In the middle of the purge, the flasks were shaken gently to ensure removal of air bubbles. The flasks were allowed to incubate for 1 h at 24 degrees C, and then 2 ml of sterile solution of 1 mM glucose and 1 mM NaNO were injected through the stopper, and 2 ml of headspace gas were withdrawn with the syringe. Flasks were allowed to incubate for another hour at 24 degrees C. At zero and 2 h time, 0.5 ml of headspace gas was removed from the flasks and assayed for NO in a gas chromatograph equipped with an electron capture detector. All gas chromatographs had stainless steel columns packed with Poropak-Q, either 50/80 or 80/100 mesh (Water Associates, Inc., Medford, MA).
- To determine respiration rates, duplicate 5-ml subsamples were placed in 25-ml Erlenmeyer flasks, and then capped with rubber stoppers. After incubating for 1 h at 24 degrees C, 0.5 ml of headspace gas was analyzed for CO in a gas chromatograph fitted with a thermal conductivity conductor. After incubating for an additional 2 h under the same conditions, a second headspace gas sample (0.5 ml) was collected and analyzed.
- Putative acetylene reduction rates were determined by the acetylene reduction method (Weaver and Danso, 1994). Samples were prepared in the same way as for denitrification potential, except that the headspace gas contained 1.5% O2, 12.5% acetylene, and 86% argon. After 24 h of incubation, 0.5 ml of headspace gas was removed and analyzed for ethylene in a gas chromatograph fitted with a flame ionization detector. A control was analyzed for ethylene production in the absence of acetylene.
- For mineralizable nitrogen measurements, the microbial conversion of organic N to inorganic N in the form of NH-N was measured by the "anaerobic" incubation method (Koeney, 1982). Duplicate 10-ml sediment subsamples were added to 50-ml screw-topped test tubes, which then were completely filled with deionized water (53 ml), capped, and incubated at 40 degrees C for 7 d. After incubation, subsamples were transferred to 25-ml Erlenmeyer flasks, and 53 ml of 4 M KCl and 0.4 ml of 10 M NaOH were added to each. The flasks were shaken for 1 h, and then analyzed with a selective ion electrode (Corning ammonium electrode, Medford, MA). Extractable ammonium concentrations were measured by adding 50 ml of 2 M KCl to duplicate 10-ml subsamples in 250-ml Erlenmeyer flasks. The flasks were capped, shaken while incubating for 1 h in the presence of 0.4 ml 10 M NaOH, and analyzed with a selective ion electrode to determine KCl-extractable ammonium concentration. Net mineralization was calculated as mineralizable N ( extractable ammonium to account for ammonium present prior to incubation.
- Phosphatase activity was determined according to the spectrophotometric assay of Tabatabai and Bremner (1969) as modified by Zou et al. (1992) One ml of 50 mM p-nitrophenyl phosphate substrate was added to duplicate 1-ml subsamples containing suspended FBOM. The tubes were shaken and then placed, along with duplicate controls with no phosphatase substrate addition, in a 30 degrees C water bath for 1 h. After incubation, 1 ml of 50 mM Sigma 104 phosphatase substrate was added to the controls; reactions were stopped immediately with the addition of 2 ml 0.5 M NaOH and 0.5 ml 0.5 M CaCl. The assay mixtures were centrifuged for 5 min at 500 x g. A 0.2-ml subsample of the supernatant was diluted with 1.8 ml deionized water, and the optical density was measured at 410 nm. A standard curve was prepared from 0.02 to 1.00 ?mol ml-1 p-nitrophenol. Enzyme activity was expressed as ?mol p-nitrophenol released gdw h. The B-glucosidase activity assay required the same general procedure as was used for phosphatase activity, except that the substrate was 1 ml 10 mM p-nitrophenyl ?-D glucopyranoside, the incubation period was 2 h, and 2 ml 0.1 M tris[hydroxymethyl]aminomethane at pH 12.0, instead of 0.5 M NaOH, were added to terminate the reaction.
- Total C and N were determined by dry combustion with a Carlo-Erba NA 1500 Series II high-temperature combustion furnace on oven-dried subsamples ground to pass through a 250-mm sieve.
Sampling
Study Extent
- FBOM samples were collected from 14 first-order streams flowing through forest in three successional age classes: three Douglas-fir (Pseudotsuga menziesii) stands approximately 10 years old (10YS), five 30 year old Douglas-fir stands (30YS) and six old-growth forest (OG) dominated by Douglas-fir and western hemlock (Tsuga heterophylla) in the H.J. Andrews Experimental Forest, in the Western Cascade Mountains of Oregon. Riparian vegetation of the 8 young stands was dominated by herbaceous plants (10YS) or deciduous trees (30YS), primarily alder (Alnus rubra) and maple (Acer macrophyllum, A. circinatum). No riparian vegetation buffers were left on harvested stands and all stands had been replanted with Douglas-fir seedlings. Streams at high (1220-1280 m) and low elevations (580-800 m) were selected. An effort was made to keep similar stand age x elevation plots on the same slope and aspect. FBOM was also collected at the settling basins at the bottom of HJA Water Sheds 1, 2, 3, 9 and 10.
- Sampling frequency: seasonal
Sampling Description
- Streams were sampled for FBOM on 8 occasions: August 9, October 14, October 28, November 4, November 18 and December 9, 1995, and April 6 and May 12, 1996. As a way of integrating FBOM characteristics from small watersheds over larger spatial scales and longer time periods, sediments were also collected from the settling basins of 5 HJA experimental small watersheds.
Spatial Sampling Units
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Andrews Experimental Forest (HJA)
W -122.26172200, E -122.10084700, N 44.28196400, S 44.19770400Altitude: 1631 to 1631 meter
Software
No software entries listed in this EML file.
Keywords
- LTER controlled vocabulary: communities (theme), stream ecology (theme), timber harvest (theme), organic matter (theme), forest ecosystems (theme), aquatic ecosystems (theme), streams (theme), microbes (theme)
- LTER core research areas: organic matter (theme)
Taxonomic Hierarchy
No taxonomic hierarchy listed in this EML file.
Metadata
HS00501 - HS00501
Object name: HS00501.csv
Records: 120
Attributes: 17
Temporal coverage: 1995-08-09 to 1996-05-12
File size: 9290 byte
Checksum (MD5): c7d5316d0dd58453994a697f057401dc
Format: headers=1, recordDelimiter=\r\n, fieldDelimiter=,, quoteCharacter=", orientation=column
Constraints (2)
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primaryKey: PRIMARY HS00501.SAMPLEDATE, HS00501.REFNAME
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notNullConstraint: NOTNULL HS00501.SAMPLEDATE, HS00501.REFNAME, HS00501.DBCODE, HS00501.BETAG, HS00501.C_N_RATIO, HS00501.DENPOT, HS00501.EXTR_AMM, HS00501.RESPS, HS00501.ENTITY
Attributes (17)
DBCODE - char(5) (nominal)
ID: HS00501.DBCODE
FSDB database code
Type system: Microsoft SQL Server 2008
Code definitions (1)
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HS005
FSDB database code HS005
ENTITY - numeric(2,0) (interval)
ID: HS00501.ENTITY
Entity number
Type system: Microsoft SQL Server 2008
Unit: number
Precision: 1
Numeric domain: type=natural, min=1.0000 (exclusive=false), max=1.0000 (exclusive=false)
REFNAME - char(4) (nominal)
ID: HS00501.REFNAME
Single letter designators for samples from undefined 1st order streams or watershed code for sediments from settling basins in watersheds in HJ Andrews Experimental Forest
Type system: Microsoft SQL Server 2008
SAMPLEDATE - datetime (dateTime)
ID: HS00501.SAMPLEDATE
Date samples collected
Type system: Microsoft SQL Server 2008
Date format: YYYY-MM-DD
TREAT - char(2) (nominal)
ID: HS00501.TREAT
Stand age
Type system: Microsoft SQL Server 2008
Code definitions (3)
-
1
10-year stand
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2
30-year stand
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code
Old growth
ELEV - char(1) (nominal)
ID: HS00501.ELEV
Elevation
Type system: Microsoft SQL Server 2008
Code definitions (2)
-
1
High
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code
Low
ASPEC - char(1) (nominal)
ID: HS00501.ASPEC
Aspect
Type system: Microsoft SQL Server 2008
Code definitions (2)
-
code
South
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1
North
RESPS - numeric(6,2) (ratio)
ID: HS00501.RESPS
CO2 respired per gram dry wt. sediment-hr
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per hour
Precision: 0.010000
Numeric domain: type=real, min=1.9800 (exclusive=false), max=213.4200 (exclusive=false)
DENPOT - numeric(6,2) (ratio)
ID: HS00501.DENPOT
Denitrification potential per gram dry wt.
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per hour
Precision: 0.010000
Numeric domain: type=real, min=0.0000 (exclusive=false), max=180.7000 (exclusive=false)
EXTR_AMM - numeric(6,2) (ratio)
ID: HS00501.EXTR_AMM
Concentration of ammonium extracted with 2m KCl
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per day
Precision: 0.010000
Numeric domain: type=real, min=0.0000 (exclusive=false), max=54.5200 (exclusive=false)
MIN_N - numeric(5,0) (ratio)
ID: HS00501.MIN_N
Concentration ammonium after incubation at 40 deg c for 7 days
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per day
Precision: 1.000000
Numeric domain: type=real, min=0.0000 (exclusive=false), max=562.0000 (exclusive=false)
N2FS - numeric(6,1) (ratio)
ID: HS00501.N2FS
Acetylene reduction as an indication of nitrogen fixation
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 0.100000
Numeric domain: type=real, min=0.0000 (exclusive=false), max=7345.2002 (exclusive=false)
CARBOS - numeric(5,0) (ratio)
ID: HS00501.CARBOS
Labile polysaccharides in mg glucose equivalents
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per hour
Precision: 1.000000
Numeric domain: type=real, min=50.0000 (exclusive=false), max=773.0000 (exclusive=false)
ORGANICP - numeric(6,3) (ratio)
ID: HS00501.ORGANICP
Organic phosphorus
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per day
Precision: 0.001000
Numeric domain: type=real, min=-0.0100 (exclusive=false), max=3.4800 (exclusive=false)
C_N_RATIO - numeric(2,0) (ratio)
ID: HS00501.C_N_RATIO
Total carbon to total nitrogen ratio
Type system: Microsoft SQL Server 2008
Unit: number
Precision: 1.000000
Numeric domain: type=real, min=11.0000 (exclusive=false), max=33.0000 (exclusive=false)
BETAG - numeric(6,2) (ratio)
ID: HS00501.BETAG
Beta-glucosidase activity measured as p nitrophenol
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 0.010000
Numeric domain: type=real, min=3.3600 (exclusive=false), max=396.1500 (exclusive=false)
PHOS - numeric(6,1) (ratio)
ID: HS00501.PHOS
Phosphatase activity measured as p nitrophenol
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 0.100000
Numeric domain: type=real, min=19.9000 (exclusive=false), max=490.7000 (exclusive=false)
Units
| micrograms per gram per day | ug/g*day | massPerMassRate | microgramPerGramPerDay | kilogramPerKilogramPerSecond | 0.0864 | micrograms per gram per day |
| micromoles per gram per hour | umol/g*hr | amountOfSubstanceWeightFlux | micromolePerGramPerHour | molePerKilogramPerSecond | 3.6 | micromoles per g per hour |
| micrograms per gram per hour | ug/g*hour | massPerMassRate | microgramPerGramPerHour | kilogramPerKilogramPerSecond | 0.0036 | micrograms per gram per hour |
| number | number | dimensionless | number | dimensionless | 1 | dimensionless number, i.e., ratio, count |
Intellectual Rights
Data Use Agreement:
The re-use of scientific data has the potential to greatly increase communication, collaboration and synthesis within and among disciplines, and thus is fostered, supported and encouraged. This Data Set is released under the Creative Commons license CC BY "Attribution" (see: https://creativecommons.org/licenses/by/4.0/). Creative Commons license CC BY - Attribution is a license that allows others to distribute, remix, tweak, and build upon your work (even commercially), as long as you are credited for the original creation. This license accommodates maximum dissemination and use of licensed materials.
It is considered professional conduct and an ethical obligation to acknowledge the work of other scientists. The Data User is asked to provide attribution of the original work if this data package is shared in whole or by individual parts or used in the derivation of other products. A recommended citation is provided for each Data Set in the Andrews LTER data catalog (see: http://andlter.forestry.oregonstate.edu/data/catalog/datacatalog.aspx). A generic citation is also provided for this Data Set on the website https://portal.edirepository.org in the summary metadata page. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator.
While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed and all data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data.
General acknowledgement: Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University.
Licensed
License: N/A
Maintenance
Maintenance update frequency: notPlanned
Description
- An update history is logged and maintained with each new version of every dataset.
Change History
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Version1 (1999-04-08) Original metadata creation
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Version2 (2005-04-18) Moved database to SQL server
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Version7 (2013-09-26) Converted freetext attributes to true type. Could not assign place keywords as sampled streams were never identified.