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HS006: The effects of debris flows on stream fine benthic organic matter (FBOM), characteristics, 1996

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Status: notPlanned
Period: 1996-06-26 to 1996-09-06
Version: 6
Published: 2011-09-14
EDI Package ID: knb-lter-and.4063.6
Source XML: HS006_6.xml

Notice

"As Is" Basis: All content, including maps and forecasts, is provided without warranties. Users are advised to independently verify critical information.

Citation

Griffiths, R. 2011. The effects of debris flows on stream fine benthic organic matter (FBOM), characteristics, 1996 Long-Term Ecological Research Andrews Forest LTER Site. [Database]. Available: https://andrewsforest-stage.forestry.oregonstate.edu/data/fsdb-data-catalog/HS006 Accessed 2026-05-10.

Abstract

The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not.

Coverage

Temporal coverage: 1996-06-26 to 1996-09-06

Geographic coverage: N/A

Bounds: W N/A, E N/A, N N/A, S N/A

Purpose
  • The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not.
Project

Title: Long-Term Ecological Research

Personnel
  • Sherri L. Johnson - Principal Investigator
    US Forest Service ;Pacific NW Research Station ;3200 SW Jefferson Way, Corvallis, OR, 97331, USA
    Phone: 541-758-7771
    Email: sherri.johnson2@usda.gov, sherri.johnson@oregonstate.edu
  • Julia A. Jones - Principal Investigator
    Oregon State University;Department of Geosciences; Wilkinson Hall 104, Corvallis, OR, 97331-5506, USA
    Phone: (541) 737-1224
    Email: Julia.Jones@oregonstate.edu, geojulia@comcast.net
    ORCID: http://orcid.org/0000-0001-9429-8925
  • Matthew G Betts - Principal Investigator
    Department of Forest Ecosystems and Society; 201E Richardson Hall; College of Forestry; Oregon State University, Corvallis, OR, 97331
    Phone: (541) 737-3841
    Email: matt.betts@oregonstate.edu
  • Michael P. Nelson - Principal Investigator
    Department of Forest Ecosystems and Society; 201K Richarson Hall; College of Forestry; Oregon State University, Corvallis, OR, 97331
    Phone: 541-737-9221
    Email: mpnelson@oregonstate.edu
    ORCID: http://orcid.org/0000-0001-6917-4752
  • David Bell - Principal Investigator
    Email: david.bell@usda.gov, david.bell@oregonstate.edu
Abstract
  • The H.J. Andrews Experimental Forest is a living laboratory that provides unparalleled opportunities for the study of forest and stream ecosystems in the central Cascade Range of Oregon. Since 1980, as a part of the National Science Foundation Long Term Ecological Research (NSF-LTER) program, the Andrews Experimental Forest has become a leader in the analysis of forest and stream ecosystem dynamics.
  • Long-term field experiments and measurement programs have focused on climate dynamics, streamflow, water quality, and vegetation succession. Currently researchers are working to develop concepts and tools needed to predict effects of natural disturbance, land use, and climate change on ecosystem structure, function, and species composition.
  • The Andrews Experimental Forest is administered cooperatively by the USDA Forest Service Pacific Northwest Research Station, Oregon State University and the Willamette National Forest. Funding for the research program comes from the National Science Foundation (NSF), US Forest Service Pacific Northwest Research Station, Oregon State University, and other sources.
Funding

Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. National Science Foundation: DEB1440409

Study Area Description
  • Long-Term Ecological Research
    The Andrews Forest is situated in the western Cascade Range of Oregon, and covers the entire 15,800-acre (6400-ha) drainage basin of Lookout Creek. Elevation ranges from 1350 to 5340 feet (410 to 1630 m). Broadly representative of the rugged mountainous landscape of the Pacific Northwest, the Andrews Forest contains excellent examples of the region's conifer forests and associated wildlife and stream ecosystems. These forests are among the tallest and most productive in the world, with tree heights of often greater than 250 ft (75 m). Streams are steep, cold and clean, providing habitat for numerous aquatic organisms.
Associated Party
  • Robert P. Griffiths
    Role: Principal Investigator
    Oregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USA
    Phone: (541) 737-6559
    Email: bbgriff@peak.org, griff@for.orst.edu
  • Robert P. Griffiths
    Role: Creator
    Oregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USA
    Phone: (541) 737-6559
    Email: bbgriff@peak.org, griff@for.orst.edu
Contact
  • Information Manager
    Andrews Forest LTER Program, US Forest Service Pacific Northwest Research Station, 3200 SW Jefferson Way, Corvallis, OR, 97331
    Email: hjaweb@fsl.orst.edu
  • Robert P. Griffiths
    Oregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USA
    Phone: (541) 737-6559
    Email: bbgriff@peak.org, griff@for.orst.edu
Publisher
  • Andrews Forest LTER Site
    Role: Publisher
    Forest Ecosystems and Society Department in Forestry, Oregon State University, 201K Richardson Hall, Corvallis, OR, 97331-5752
    Phone: (541) 737-8480
    Email: lterweb@fsl.orst.edu
Study Description

The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not. The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not. Field Methods - HS006

Purpose: The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not.

Methods

Method Steps

Field Methods - HS006
  • Sediments were sampled on 4 occasions: 6/26, 7/1, 7/30, 9/6 1996. FBOM was collected from stream beds with a hand vacuum pump into a 2 L collecting jar. The intake line was fitted with a 1 mm stainless steel screen, allowing benthic material to be wet-sieved during sampling. Samples were transferred to polystyrene jars (500 mL) and stored in an insulated chest with stream water and ice. In the laboratory, a slurry was prepared by decanting excess stream water from the jars and mixing, keeping FBOM suspended while subsampling. Subsamples were dispensed using 1, 3, or 5 mL plastic syringes with enlarged openings. All laboratory analyses of slurries began immediately upon return from FBOM collection (Bonin et al., 2000) conform with known time constraints on sampling and sample processing (Bonin et al., 1999).
Laboratory Methods - HS006
  • Denitrification potential was measured as NO production in FBOM slurries incubated in an AR atmosphere and amended with glucose and NaNO (Martin et al. 1988). Duplicate 5 mL FBOM slurry samples in 25 mL Erlenmeyer flasks were capped with rubber stoppers and purged for 3 minutes with argon at 120 cc/min. The flasks were gently shaken to remove air bubble and incubated at 24°C for 1h. After this initial incubation, 2 mL of a sterile 1 mM glucose and 1 mM NaNO solution was injected through the stopper and 2 mL of headspace removed. Incubation was continued at 24°C for an additional 3 h. After 1 and 3 hours, a gas chromatograph (GC) equipped with an electron capture detector was used to measure NO concentrations.
  • Putative nitrogen fixation rates were measured by acetylene reduction (Weaver and Danso 1994). Samples were prepared as for denitrification except the headspace was replaced with 1.5% O, 12.5% acetylene and 86% argon. After the samples had incubated for 24 h, ethylene concentrations were measured on a GC equipped with a flame ionization detector. A control without acetylene was analyzed for endogenous ethylene production.
  • Respiration was measured on duplicate 5 mL FBOM slurry samples in 25 mL Erlenmeyer flasks capped with rubber stoppers. Slurries were incubated at 24°C for 3 h. At 1 and 3 h., the headspace was analyzed for CO on a GC fitted with a thermal conductivity conductor.
  • s-glucosidase activities were measured using the spectrophotometric assay of Tabatabai and Bremner (1969), as modified by Zou et al. (1992). One mL of 10 mM p-nitrophenyl s-D glucopyranoside substrate was added to duplicate 1 mL subsamples containing suspended FBOM. The tubes were shaken and then placed in a 30°C water bath for 2 hours, along with duplicate controls with no s-glucosidase substrate addition. After incubating, 1 mL of 10 mM p-nitrophenyl s-D glucopyranoside was added to the controls and all reactions were immediately stopped with the addition of 0.5 mL of 0.5 M CaCl and 2 mL of 0.1 M tris[hydroxymethyl]aminomethane at pH 12.0. The mixtures were centrifuged for 5 minutes at 500 x g. From the supernatant, 0.2 mL of solution was diluted with 2.0 mL deionized water and the optical density measured at 410 nm. A standard curve was prepared from 0.02-1.0 Fmol mL p-nitrophenol. Phosphatase followed the same general procedure as for s-glucosidase, except the substrate used was 1 mL of 50 mM p-nitrophenyl phosphate, incubation period was 1 hour, and 2 mL of 0.5 M NaOH instead of 0.1 M tris[hydroxymethyl]aminomethane, were added to terminate the reaction.
  • Mineralizable nitrogen measurements were determined using the 7 d anaerobic incubation method (Keeney 1982). Duplicate 10 mL FBOM samples in 50 mL screw-topped test tubes were filled to the top edge with deionized water, capped and incubated at 40°C for 7 d. After incubation an equal amount of 4 M KCl was added, shaken for 1 hour in the presence of 0.4 mL 10M NaOH and analyzed for NH-N using a selective ion electrode (Corning ammonium electrode, Medford, MA). The value for extractable ammonium was subtracted from the total to account for background levels of ammonium prior to incubation.
  • Extractable ammonium was extracted by adding 50 mL of 2 M KCl to duplicate 10 mL samples in 250 mL Erlenmeyer flasks. Flasks were capped, shaken while incubating for 1 hour in the presence of 0.4 mL 10 M NaOH and analyzed using a selective ion electrode to determine KCl-extractable ammonium concentration.

Sampling

Study Extent
  • Sampling frequency: Four monthly samples at each site.
Sampling Description
  • We wanted to determine the effects of recent debris flows on the biochemical characteristics of small stream fine benthic organic matter (FBOM). Seven pairs of streams were used; half had experienced debris flows during the late winter storms and half did not.
Spatial Sampling Units
  • Andrews Experimental Forest (HJA)
    W -122.26172200, E -122.10084700, N 44.28196400, S 44.19770400
    Altitude: 1631 to 1631 meter
Software

No software entries listed in this EML file.

Keywords
  • LTER controlled vocabulary: stream ecology (theme), debris flows (theme), organic matter (theme), sediments (theme), forest ecosystems (theme), aquatic ecosystems (theme), streams (theme)
  • LTER core research areas: organic matter (theme)
Taxonomic Hierarchy

No taxonomic hierarchy listed in this EML file.

Data Entities
# Entity Metadata Data
1 HS00601
HS00601
1996 Stream pulse data: Biochemical analysis of fine benthic organic matter in streams experiencing debris flows compared with those with no flows.
METADATA DATA
Metadata
HS00601 - HS00601

Object name: HS00601.csv

Records: N/A

Attributes: 22

Temporal coverage: 1996-06-26 to 1996-09-06

File size: 5707 byte

Checksum (MD5): 30a0893a4b3cc5237bfc38b4b8ecce7d

Format: headers=1, recordDelimiter=\r\n, fieldDelimiter=,, quoteCharacter=", orientation=column

Constraints (2)
  • primaryKey: PRIMARY
    HS00601.SITE, HS00601.CONDITN, HS00601.PAIR, HS00601.DATE
  • notNullConstraint: NOTNULL
    HS00601.DATACODE, HS00601.FORMAT, HS00601.SITE, HS00601.CONDITN, HS00601.PAIR, HS00601.DATE, HS00601.TEMP, HS00601.RESP_OM, HS00601.RESP, HS00601.DENIT_OM, HS00601.DENIT, HS00601.B_GLUC_OM, HS00601.B_GLUC, HS00601.DRYWT_OM
Attributes (22)
DATACODE - char(5) (ordinal)

ID: HS00601.DATACODE

Database code

Type system: Microsoft SQL Server 2008

FORMAT - numeric(1,0) (interval)

ID: HS00601.FORMAT

Entity number

Type system: Microsoft SQL Server 2008

Unit: number

Precision: 1

Numeric domain: type=natural, min=1.0000 (exclusive=false), max=1.0000 (exclusive=false)

SITE - char(3) (ordinal)

ID: HS00601.SITE

Site designator

Type system: Microsoft SQL Server 2008

CONDITN - char(3) (ordinal)

ID: HS00601.CONDITN

Condition of stream; was there a debris flow? (Yes, No)

Type system: Microsoft SQL Server 2008

Code definitions (2)
  • yes
    there was a debris flow
  • no
    there was no debris flow
PAIR - numeric(1,0) (interval)

ID: HS00601.PAIR

Designators for paired streams; there were seven pairs with and without debris flow

Type system: Microsoft SQL Server 2008

Unit: number

Precision: 1

Numeric domain: type=natural, min=1.0000 (exclusive=false), max=7.0000 (exclusive=false)

DATE - char(1) (ordinal)

ID: HS00601.DATE

Sample date; 1=6/26/96; 2=7/1/96; 3=7/30/96; 4=9/6/96

Type system: Microsoft SQL Server 2008

Code definitions (4)
  • 1
    06/26/1996 sample
  • 2
    07/01/1996 sample
  • 3
    07/30/1996 sample
  • 4
    09/06/1996 sample
TEMP - numeric(4,1) (ratio)

ID: HS00601.TEMP

Stream temperature

Type system: Microsoft SQL Server 2008

Unit: degrees Celsius

Precision: 1

Numeric domain: type=real, min=7.0000 (exclusive=false), max=21.0000 (exclusive=false)

RESP_OM - numeric(6,2) (ratio)

ID: HS00601.RESP_OM

Slurry respiration rates normalized to g organic matter

Type system: Microsoft SQL Server 2008

Unit: micrograms per gram per hour

Precision: 1

Numeric domain: type=real, min=15.7500 (exclusive=false), max=165.1700 (exclusive=false)

RESP - numeric(6,2) (ratio)

ID: HS00601.RESP

Slurry respiration rates normalized to g dry mass

Type system: Microsoft SQL Server 2008

Unit: micrograms per gram per hour

Precision: 1

Numeric domain: type=real, min=2.8600 (exclusive=false), max=43.9600 (exclusive=false)

DENIT_OM - numeric(6,2) (ratio)

ID: HS00601.DENIT_OM

Slurry denitrification potential normalized to g organic

Type system: Microsoft SQL Server 2008

Unit: micrograms per gram per hour

Precision: 1

Numeric domain: type=real, min=1.4400 (exclusive=false), max=20.9700 (exclusive=false)

DENIT - numeric(6,2) (ratio)

ID: HS00601.DENIT

Slurry denitrification potential normalized to g dry mass

Type system: Microsoft SQL Server 2008

Unit: micrograms per gram per hour

Precision: 1

Numeric domain: type=real, min=0.2500 (exclusive=false), max=6.7700 (exclusive=false)

N2FIX_OM - numeric(6,2) (ratio)

ID: HS00601.N2FIX_OM

Slurry nitrogen fixation normalized to g organic matter

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram per hour

Precision: 1

Numeric domain: type=real, min=0.0100 (exclusive=false), max=71.0600 (exclusive=false)

N2FIX - numeric(6,2) (ratio)

ID: HS00601.N2FIX

Slurry nitrogen fixation normalized to g dry mass

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram per hour

Precision: 1

Numeric domain: type=real, min=0.0200 (exclusive=false), max=76.4600 (exclusive=false)

PHOSPH_OM - numeric(6,2) (ratio)

ID: HS00601.PHOSPH_OM

Phosphatase activity normalized to g OM

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram per hour

Precision: 1

Numeric domain: type=real, min=10.6900 (exclusive=false), max=121.9100 (exclusive=false)

PHOSPH - numeric(6,2) (ratio)

ID: HS00601.PHOSPH

Phosphatase activity normalized to g dry mass

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram per hour

Precision: 1

Numeric domain: type=real, min=1.3900 (exclusive=false), max=31.2700 (exclusive=false)

B_GLUC_OM - numeric(6,2) (ratio)

ID: HS00601.B_GLUC_OM

Beta-glucosidase activity normalized to g OM

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram per hour

Precision: 1

Numeric domain: type=real, min=2.6700 (exclusive=false), max=61.6400 (exclusive=false)

B_GLUC - numeric(6,2) (ratio)

ID: HS00601.B_GLUC

Beta-glucosidase activity normalized to g dry mass

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram per hour

Precision: 1

Numeric domain: type=real, min=0.3500 (exclusive=false), max=17.0300 (exclusive=false)

EXAMM_OM - numeric(5,2) (ratio)

ID: HS00601.EXAMM_OM

Extractable ammonium normalized to g OM

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram

Precision: 1

Numeric domain: type=real, min=1.0400 (exclusive=false), max=23.8300 (exclusive=false)

EXAMM - numeric(5,2) (ratio)

ID: HS00601.EXAMM

Extractable ammonium normalized to g dry mass

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram

Precision: 1

Numeric domain: type=real, min=0.1500 (exclusive=false), max=6.3400 (exclusive=false)

MINN_OM - numeric(6,2) (ratio)

ID: HS00601.MINN_OM

Mineralizable nitrogen normalized to g OM

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram

Precision: 1

Numeric domain: type=real, min=22.7200 (exclusive=false), max=260.4200 (exclusive=false)

MINN - numeric(5,2) (ratio)

ID: HS00601.MINN

Mineralizable nitrogen normalized to g dry mass

Type system: Microsoft SQL Server 2008

Unit: micromoles per gram

Precision: 1

Numeric domain: type=real, min=3.2200 (exclusive=false), max=69.3100 (exclusive=false)

DRYWT_OM - numeric(4,2) (ratio)

ID: HS00601.DRYWT_OM

Dry weight divided by OM

Type system: Microsoft SQL Server 2008

Unit: number

Precision: 1

Numeric domain: type=real, min=0.5600 (exclusive=false), max=3.9600 (exclusive=false)

Units
degrees Celsius deg c temperature celsiusDegree kelvin 1 Degrees Celsius; a common unit of temperature; constantToSI=273.18
micrograms per gram per hour ug/g*hour massPerMassRate microgramPerGramPerHour kilogramPerKilogramPerSecond 0.0036 micrograms per gram per hour
micromoles per gram per hour umol/g*hr amountOfSubstanceWeightFlux micromolePerGramPerHour molePerKilogramPerSecond 3.6 micromoles per g per hour
micromoles per gram umol/g amountOfSubstanceWeight micromolePerGram molePerKilogram 0.001 micromoles per gram
number number dimensionless number dimensionless 1 dimensionless number, i.e., ratio, count
Intellectual Rights

Data Use Agreement:

The re-use of scientific data has the potential to greatly increase communication, collaboration and synthesis within and among disciplines, and thus is fostered, supported and encouraged. This Data Set is released under the Creative Commons license CC BY "Attribution" (see: https://creativecommons.org/licenses/by/4.0/). Creative Commons license CC BY - Attribution is a license that allows others to distribute, remix, tweak, and build upon your work (even commercially), as long as you are credited for the original creation. This license accommodates maximum dissemination and use of licensed materials.

It is considered professional conduct and an ethical obligation to acknowledge the work of other scientists. The Data User is asked to provide attribution of the original work if this data package is shared in whole or by individual parts or used in the derivation of other products. A recommended citation is provided for each Data Set in the Andrews LTER data catalog (see: http://andlter.forestry.oregonstate.edu/data/catalog/datacatalog.aspx). A generic citation is also provided for this Data Set on the website https://portal.edirepository.org in the summary metadata page. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator.

While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed and all data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data.

General acknowledgement: Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. If data used in publication, the PI will be listed as a coauthor. Whenever these data are presented in whatever form, the PI will be acknowledged.

Licensed

License: N/A

Maintenance

Maintenance update frequency: notPlanned

Description

  • An update history is logged and maintained with each new version of every dataset.

Change History

  • Version1 (2001-04-23)
    Original metadata creation
  • Version2 (2005-06-27)
    Moved database to SQL Server