HS006: The effects of debris flows on stream fine benthic organic matter (FBOM), characteristics, 1996
Notice
"As Is" Basis: All content, including maps and forecasts, is provided without warranties. Users are advised to independently verify critical information.
Citation
Griffiths, R. 2011. The effects of debris flows on stream fine benthic organic matter (FBOM), characteristics, 1996 Long-Term Ecological Research Andrews Forest LTER Site. [Database]. Available: https://andrewsforest-stage.forestry.oregonstate.edu/data/fsdb-data-catalog/HS006 Accessed 2026-05-10.
Abstract
The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not.
Coverage
Temporal coverage: 1996-06-26 to 1996-09-06
Geographic coverage: N/A
Bounds: W N/A, E N/A, N N/A, S N/A
Purpose
- The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not.
Project
Title: Long-Term Ecological Research
Personnel
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Sherri L. Johnson - Principal Investigator US Forest Service ;Pacific NW Research Station ;3200 SW Jefferson Way, Corvallis, OR, 97331, USAPhone: 541-758-7771Email: sherri.johnson2@usda.gov, sherri.johnson@oregonstate.edu
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Julia A. Jones - Principal Investigator Oregon State University;Department of Geosciences; Wilkinson Hall 104, Corvallis, OR, 97331-5506, USAPhone: (541) 737-1224Email: Julia.Jones@oregonstate.edu, geojulia@comcast.netORCID: http://orcid.org/0000-0001-9429-8925
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Matthew G Betts - Principal Investigator Department of Forest Ecosystems and Society; 201E Richardson Hall; College of Forestry; Oregon State University, Corvallis, OR, 97331Phone: (541) 737-3841Email: matt.betts@oregonstate.edu
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Michael P. Nelson - Principal Investigator Department of Forest Ecosystems and Society; 201K Richarson Hall; College of Forestry; Oregon State University, Corvallis, OR, 97331Phone: 541-737-9221Email: mpnelson@oregonstate.eduORCID: http://orcid.org/0000-0001-6917-4752
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David Bell - Principal Investigator Email: david.bell@usda.gov, david.bell@oregonstate.edu
Abstract
- The H.J. Andrews Experimental Forest is a living laboratory that provides unparalleled opportunities for the study of forest and stream ecosystems in the central Cascade Range of Oregon. Since 1980, as a part of the National Science Foundation Long Term Ecological Research (NSF-LTER) program, the Andrews Experimental Forest has become a leader in the analysis of forest and stream ecosystem dynamics.
- Long-term field experiments and measurement programs have focused on climate dynamics, streamflow, water quality, and vegetation succession. Currently researchers are working to develop concepts and tools needed to predict effects of natural disturbance, land use, and climate change on ecosystem structure, function, and species composition.
- The Andrews Experimental Forest is administered cooperatively by the USDA Forest Service Pacific Northwest Research Station, Oregon State University and the Willamette National Forest. Funding for the research program comes from the National Science Foundation (NSF), US Forest Service Pacific Northwest Research Station, Oregon State University, and other sources.
Funding
Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. National Science Foundation: DEB1440409
Study Area Description
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Long-Term Ecological Research The Andrews Forest is situated in the western Cascade Range of Oregon, and covers the entire 15,800-acre (6400-ha) drainage basin of Lookout Creek. Elevation ranges from 1350 to 5340 feet (410 to 1630 m). Broadly representative of the rugged mountainous landscape of the Pacific Northwest, the Andrews Forest contains excellent examples of the region's conifer forests and associated wildlife and stream ecosystems. These forests are among the tallest and most productive in the world, with tree heights of often greater than 250 ft (75 m). Streams are steep, cold and clean, providing habitat for numerous aquatic organisms.
Associated Party
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Robert P. Griffiths
Role: Principal InvestigatorOregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USAPhone: (541) 737-6559Email: bbgriff@peak.org, griff@for.orst.edu
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Robert P. Griffiths
Role: CreatorOregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USAPhone: (541) 737-6559Email: bbgriff@peak.org, griff@for.orst.edu
Contact
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Information Manager
Andrews Forest LTER Program, US Forest Service Pacific Northwest Research Station, 3200 SW Jefferson Way, Corvallis, OR, 97331Email: hjaweb@fsl.orst.edu
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Robert P. Griffiths
Oregon State University;Dept. of Forest Science;321 Richardson Hall, Corvallis, OR, 97331-5752, USAPhone: (541) 737-6559Email: bbgriff@peak.org, griff@for.orst.edu
Publisher
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Andrews Forest LTER Site
Role: PublisherForest Ecosystems and Society Department in Forestry, Oregon State University, 201K Richardson Hall, Corvallis, OR, 97331-5752Phone: (541) 737-8480Email: lterweb@fsl.orst.edu
Study Description
The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not. The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not. Field Methods - HS006
Purpose: The biochemical characteristics of fine benthic organic matter (FBOM) were studied in 14 stream reaches. Half of these low-order mountain stream reaches had experienced significant debris flow events during server winter storms and half did not.
Methods
Method Steps
Field Methods - HS006
- Sediments were sampled on 4 occasions: 6/26, 7/1, 7/30, 9/6 1996. FBOM was collected from stream beds with a hand vacuum pump into a 2 L collecting jar. The intake line was fitted with a 1 mm stainless steel screen, allowing benthic material to be wet-sieved during sampling. Samples were transferred to polystyrene jars (500 mL) and stored in an insulated chest with stream water and ice. In the laboratory, a slurry was prepared by decanting excess stream water from the jars and mixing, keeping FBOM suspended while subsampling. Subsamples were dispensed using 1, 3, or 5 mL plastic syringes with enlarged openings. All laboratory analyses of slurries began immediately upon return from FBOM collection (Bonin et al., 2000) conform with known time constraints on sampling and sample processing (Bonin et al., 1999).
Laboratory Methods - HS006
- Denitrification potential was measured as NO production in FBOM slurries incubated in an AR atmosphere and amended with glucose and NaNO (Martin et al. 1988). Duplicate 5 mL FBOM slurry samples in 25 mL Erlenmeyer flasks were capped with rubber stoppers and purged for 3 minutes with argon at 120 cc/min. The flasks were gently shaken to remove air bubble and incubated at 24°C for 1h. After this initial incubation, 2 mL of a sterile 1 mM glucose and 1 mM NaNO solution was injected through the stopper and 2 mL of headspace removed. Incubation was continued at 24°C for an additional 3 h. After 1 and 3 hours, a gas chromatograph (GC) equipped with an electron capture detector was used to measure NO concentrations.
- Putative nitrogen fixation rates were measured by acetylene reduction (Weaver and Danso 1994). Samples were prepared as for denitrification except the headspace was replaced with 1.5% O, 12.5% acetylene and 86% argon. After the samples had incubated for 24 h, ethylene concentrations were measured on a GC equipped with a flame ionization detector. A control without acetylene was analyzed for endogenous ethylene production.
- Respiration was measured on duplicate 5 mL FBOM slurry samples in 25 mL Erlenmeyer flasks capped with rubber stoppers. Slurries were incubated at 24°C for 3 h. At 1 and 3 h., the headspace was analyzed for CO on a GC fitted with a thermal conductivity conductor.
- s-glucosidase activities were measured using the spectrophotometric assay of Tabatabai and Bremner (1969), as modified by Zou et al. (1992). One mL of 10 mM p-nitrophenyl s-D glucopyranoside substrate was added to duplicate 1 mL subsamples containing suspended FBOM. The tubes were shaken and then placed in a 30°C water bath for 2 hours, along with duplicate controls with no s-glucosidase substrate addition. After incubating, 1 mL of 10 mM p-nitrophenyl s-D glucopyranoside was added to the controls and all reactions were immediately stopped with the addition of 0.5 mL of 0.5 M CaCl and 2 mL of 0.1 M tris[hydroxymethyl]aminomethane at pH 12.0. The mixtures were centrifuged for 5 minutes at 500 x g. From the supernatant, 0.2 mL of solution was diluted with 2.0 mL deionized water and the optical density measured at 410 nm. A standard curve was prepared from 0.02-1.0 Fmol mL p-nitrophenol. Phosphatase followed the same general procedure as for s-glucosidase, except the substrate used was 1 mL of 50 mM p-nitrophenyl phosphate, incubation period was 1 hour, and 2 mL of 0.5 M NaOH instead of 0.1 M tris[hydroxymethyl]aminomethane, were added to terminate the reaction.
- Mineralizable nitrogen measurements were determined using the 7 d anaerobic incubation method (Keeney 1982). Duplicate 10 mL FBOM samples in 50 mL screw-topped test tubes were filled to the top edge with deionized water, capped and incubated at 40°C for 7 d. After incubation an equal amount of 4 M KCl was added, shaken for 1 hour in the presence of 0.4 mL 10M NaOH and analyzed for NH-N using a selective ion electrode (Corning ammonium electrode, Medford, MA). The value for extractable ammonium was subtracted from the total to account for background levels of ammonium prior to incubation.
- Extractable ammonium was extracted by adding 50 mL of 2 M KCl to duplicate 10 mL samples in 250 mL Erlenmeyer flasks. Flasks were capped, shaken while incubating for 1 hour in the presence of 0.4 mL 10 M NaOH and analyzed using a selective ion electrode to determine KCl-extractable ammonium concentration.
Sampling
Study Extent
- Sampling frequency: Four monthly samples at each site.
Sampling Description
- We wanted to determine the effects of recent debris flows on the biochemical characteristics of small stream fine benthic organic matter (FBOM). Seven pairs of streams were used; half had experienced debris flows during the late winter storms and half did not.
Spatial Sampling Units
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Andrews Experimental Forest (HJA)
W -122.26172200, E -122.10084700, N 44.28196400, S 44.19770400Altitude: 1631 to 1631 meter
Software
No software entries listed in this EML file.
Keywords
- LTER controlled vocabulary: stream ecology (theme), debris flows (theme), organic matter (theme), sediments (theme), forest ecosystems (theme), aquatic ecosystems (theme), streams (theme)
- LTER core research areas: organic matter (theme)
Taxonomic Hierarchy
No taxonomic hierarchy listed in this EML file.
Data Entities
| # | Entity | Metadata | Data |
|---|---|---|---|
| 1 |
HS00601
HS00601 1996 Stream pulse data: Biochemical analysis of fine benthic organic matter in streams experiencing debris flows compared with those with no flows. |
METADATA | DATA |
Metadata
HS00601 - HS00601
Object name: HS00601.csv
Records: N/A
Attributes: 22
Temporal coverage: 1996-06-26 to 1996-09-06
File size: 5707 byte
Checksum (MD5): 30a0893a4b3cc5237bfc38b4b8ecce7d
Format: headers=1, recordDelimiter=\r\n, fieldDelimiter=,, quoteCharacter=", orientation=column
Constraints (2)
-
primaryKey: PRIMARY HS00601.SITE, HS00601.CONDITN, HS00601.PAIR, HS00601.DATE
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notNullConstraint: NOTNULL HS00601.DATACODE, HS00601.FORMAT, HS00601.SITE, HS00601.CONDITN, HS00601.PAIR, HS00601.DATE, HS00601.TEMP, HS00601.RESP_OM, HS00601.RESP, HS00601.DENIT_OM, HS00601.DENIT, HS00601.B_GLUC_OM, HS00601.B_GLUC, HS00601.DRYWT_OM
Attributes (22)
DATACODE - char(5) (ordinal)
ID: HS00601.DATACODE
Database code
Type system: Microsoft SQL Server 2008
FORMAT - numeric(1,0) (interval)
ID: HS00601.FORMAT
Entity number
Type system: Microsoft SQL Server 2008
Unit: number
Precision: 1
Numeric domain: type=natural, min=1.0000 (exclusive=false), max=1.0000 (exclusive=false)
SITE - char(3) (ordinal)
ID: HS00601.SITE
Site designator
Type system: Microsoft SQL Server 2008
CONDITN - char(3) (ordinal)
ID: HS00601.CONDITN
Condition of stream; was there a debris flow? (Yes, No)
Type system: Microsoft SQL Server 2008
Code definitions (2)
-
yes
there was a debris flow
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no
there was no debris flow
PAIR - numeric(1,0) (interval)
ID: HS00601.PAIR
Designators for paired streams; there were seven pairs with and without debris flow
Type system: Microsoft SQL Server 2008
Unit: number
Precision: 1
Numeric domain: type=natural, min=1.0000 (exclusive=false), max=7.0000 (exclusive=false)
DATE - char(1) (ordinal)
ID: HS00601.DATE
Sample date; 1=6/26/96; 2=7/1/96; 3=7/30/96; 4=9/6/96
Type system: Microsoft SQL Server 2008
Code definitions (4)
-
1
06/26/1996 sample
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2
07/01/1996 sample
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3
07/30/1996 sample
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4
09/06/1996 sample
TEMP - numeric(4,1) (ratio)
ID: HS00601.TEMP
Stream temperature
Type system: Microsoft SQL Server 2008
Unit: degrees Celsius
Precision: 1
Numeric domain: type=real, min=7.0000 (exclusive=false), max=21.0000 (exclusive=false)
RESP_OM - numeric(6,2) (ratio)
ID: HS00601.RESP_OM
Slurry respiration rates normalized to g organic matter
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per hour
Precision: 1
Numeric domain: type=real, min=15.7500 (exclusive=false), max=165.1700 (exclusive=false)
RESP - numeric(6,2) (ratio)
ID: HS00601.RESP
Slurry respiration rates normalized to g dry mass
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per hour
Precision: 1
Numeric domain: type=real, min=2.8600 (exclusive=false), max=43.9600 (exclusive=false)
DENIT_OM - numeric(6,2) (ratio)
ID: HS00601.DENIT_OM
Slurry denitrification potential normalized to g organic
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per hour
Precision: 1
Numeric domain: type=real, min=1.4400 (exclusive=false), max=20.9700 (exclusive=false)
DENIT - numeric(6,2) (ratio)
ID: HS00601.DENIT
Slurry denitrification potential normalized to g dry mass
Type system: Microsoft SQL Server 2008
Unit: micrograms per gram per hour
Precision: 1
Numeric domain: type=real, min=0.2500 (exclusive=false), max=6.7700 (exclusive=false)
N2FIX_OM - numeric(6,2) (ratio)
ID: HS00601.N2FIX_OM
Slurry nitrogen fixation normalized to g organic matter
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 1
Numeric domain: type=real, min=0.0100 (exclusive=false), max=71.0600 (exclusive=false)
N2FIX - numeric(6,2) (ratio)
ID: HS00601.N2FIX
Slurry nitrogen fixation normalized to g dry mass
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 1
Numeric domain: type=real, min=0.0200 (exclusive=false), max=76.4600 (exclusive=false)
PHOSPH_OM - numeric(6,2) (ratio)
ID: HS00601.PHOSPH_OM
Phosphatase activity normalized to g OM
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 1
Numeric domain: type=real, min=10.6900 (exclusive=false), max=121.9100 (exclusive=false)
PHOSPH - numeric(6,2) (ratio)
ID: HS00601.PHOSPH
Phosphatase activity normalized to g dry mass
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 1
Numeric domain: type=real, min=1.3900 (exclusive=false), max=31.2700 (exclusive=false)
B_GLUC_OM - numeric(6,2) (ratio)
ID: HS00601.B_GLUC_OM
Beta-glucosidase activity normalized to g OM
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 1
Numeric domain: type=real, min=2.6700 (exclusive=false), max=61.6400 (exclusive=false)
B_GLUC - numeric(6,2) (ratio)
ID: HS00601.B_GLUC
Beta-glucosidase activity normalized to g dry mass
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram per hour
Precision: 1
Numeric domain: type=real, min=0.3500 (exclusive=false), max=17.0300 (exclusive=false)
EXAMM_OM - numeric(5,2) (ratio)
ID: HS00601.EXAMM_OM
Extractable ammonium normalized to g OM
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram
Precision: 1
Numeric domain: type=real, min=1.0400 (exclusive=false), max=23.8300 (exclusive=false)
EXAMM - numeric(5,2) (ratio)
ID: HS00601.EXAMM
Extractable ammonium normalized to g dry mass
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram
Precision: 1
Numeric domain: type=real, min=0.1500 (exclusive=false), max=6.3400 (exclusive=false)
MINN_OM - numeric(6,2) (ratio)
ID: HS00601.MINN_OM
Mineralizable nitrogen normalized to g OM
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram
Precision: 1
Numeric domain: type=real, min=22.7200 (exclusive=false), max=260.4200 (exclusive=false)
MINN - numeric(5,2) (ratio)
ID: HS00601.MINN
Mineralizable nitrogen normalized to g dry mass
Type system: Microsoft SQL Server 2008
Unit: micromoles per gram
Precision: 1
Numeric domain: type=real, min=3.2200 (exclusive=false), max=69.3100 (exclusive=false)
DRYWT_OM - numeric(4,2) (ratio)
ID: HS00601.DRYWT_OM
Dry weight divided by OM
Type system: Microsoft SQL Server 2008
Unit: number
Precision: 1
Numeric domain: type=real, min=0.5600 (exclusive=false), max=3.9600 (exclusive=false)
Units
| degrees Celsius | deg c | temperature | celsiusDegree | kelvin | 1 | Degrees Celsius; a common unit of temperature; constantToSI=273.18 |
| micrograms per gram per hour | ug/g*hour | massPerMassRate | microgramPerGramPerHour | kilogramPerKilogramPerSecond | 0.0036 | micrograms per gram per hour |
| micromoles per gram per hour | umol/g*hr | amountOfSubstanceWeightFlux | micromolePerGramPerHour | molePerKilogramPerSecond | 3.6 | micromoles per g per hour |
| micromoles per gram | umol/g | amountOfSubstanceWeight | micromolePerGram | molePerKilogram | 0.001 | micromoles per gram |
| number | number | dimensionless | number | dimensionless | 1 | dimensionless number, i.e., ratio, count |
Intellectual Rights
Data Use Agreement:
The re-use of scientific data has the potential to greatly increase communication, collaboration and synthesis within and among disciplines, and thus is fostered, supported and encouraged. This Data Set is released under the Creative Commons license CC BY "Attribution" (see: https://creativecommons.org/licenses/by/4.0/). Creative Commons license CC BY - Attribution is a license that allows others to distribute, remix, tweak, and build upon your work (even commercially), as long as you are credited for the original creation. This license accommodates maximum dissemination and use of licensed materials.
It is considered professional conduct and an ethical obligation to acknowledge the work of other scientists. The Data User is asked to provide attribution of the original work if this data package is shared in whole or by individual parts or used in the derivation of other products. A recommended citation is provided for each Data Set in the Andrews LTER data catalog (see: http://andlter.forestry.oregonstate.edu/data/catalog/datacatalog.aspx). A generic citation is also provided for this Data Set on the website https://portal.edirepository.org in the summary metadata page. Data Users are thus strongly encouraged to consider consultation, collaboration and/or co-authorship with the Data Set Creator.
While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed and all data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data.
General acknowledgement: Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 2025755), US Forest Service Pacific Northwest Research Station, and Oregon State University. If data used in publication, the PI will be listed as a coauthor. Whenever these data are presented in whatever form, the PI will be acknowledged.
Licensed
License: N/A
Maintenance
Maintenance update frequency: notPlanned
Description
- An update history is logged and maintained with each new version of every dataset.
Change History
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Version1 (2001-04-23) Original metadata creation
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Version2 (2005-06-27) Moved database to SQL Server